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  5. Zm00001e000439_P004

Zm00001e000439_P004 (Zm00001e000439)


Aliases : Zm00001e000439

Description : subfamily ABCG transporter


Gene families : OG0000438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e000439_P004
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00153830 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
AMTR_s01016p00008750 evm_27.TU.AmTr_v1... ABC transporter G family member 22 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Azfi_s0412.g068557 No alias subfamily ABCG transporter & original description: CDS=1-2001 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021582.39 No alias ABC transporter G family member 22 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Cre17.g743547 No alias ABC transporter G family member 21 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ehy_g06097 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os03g06139.1 LOC_Os03g06139 subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Pir_g13582 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 497 706
IPR003439 ABC_transporter-like_ATP-bd 176 326
No external refs found!