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  5. Gb_30550

Gb_30550 (GCT)


Aliases : GCT

Description : component MED13 of kinase module of MEDIATOR transcription co-activator complex


Gene families : OG0005581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005581_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_30550
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00198p00028070 GCT,... RNA biosynthesis.RNA polymerase II-dependent... 0.08 OrthoFinder output from all 47 species
AT1G55325 GCT RNA polymerase II transcription mediators 0.13 OrthoFinder output from all 47 species
Adi_g014199 GCT component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Ala_g37172 GCT component *(MED13) of kinase module of MEDIATOR... 0.1 OrthoFinder output from all 47 species
Aop_g09012 GCT component *(MED13) of kinase module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Azfi_s0015.g014125 GCT component *(MED13) of kinase module of MEDIATOR... 0.08 OrthoFinder output from all 47 species
Ceric.39G047500.1 GCT, Ceric.39G047500 component *(MED13) of kinase module of MEDIATOR... 0.1 OrthoFinder output from all 47 species
Cre02.g080300 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g04156 GCT component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Ehy_g17091 GCT component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
GSVIVT01025465001 GCT RNA biosynthesis.RNA polymerase II-dependent... 0.07 OrthoFinder output from all 47 species
LOC_Os05g37500.1 GCT, LOC_Os05g37500 component MED13 of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Len_g28451 GCT component *(MED13) of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
MA_10431052g0020 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_577306g0010 GCT no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_84527g0010 GCT component MED13 of kinase module of MEDIATOR... 0.11 OrthoFinder output from all 47 species
Mp1g01940.1 GCT component MED13 of kinase module of MEDIATOR... 0.1 OrthoFinder output from all 47 species
Msp_g14816 GCT component *(MED13) of kinase module of MEDIATOR... 0.08 OrthoFinder output from all 47 species
Ore_g36609 GCT component *(MED13) of kinase module of MEDIATOR... 0.06 OrthoFinder output from all 47 species
Pir_g18257 GCT component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Ppi_g03289 GCT component *(MED13) of kinase module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026430 GCT component *(MED13) of kinase module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Sam_g17992 No alias component *(MED13) of kinase module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Smo447924 GCT RNA biosynthesis.RNA polymerase II-dependent... 0.07 OrthoFinder output from all 47 species
Solyc04g039950.4.1 GCT, Solyc04g039950 component MED13 of kinase module of MEDIATOR... 0.08 OrthoFinder output from all 47 species
Zm00001e036721_P002 GCT, Zm00001e036721 component MED13 of kinase module of MEDIATOR... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041285 MID_MedPIWI 1052 1095
No external refs found!