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Gb_25434


Description : Mediator of RNA polymerase II transcription subunit 15a OS=Arabidopsis thaliana (sp|f4i171|md15a_arath : 135.0)


Gene families : OG0001850 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001850_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_25434
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT1G15780 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.08 OrthoFinder output from all 47 species
Als_g28046 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01022351001 No alias Mediator of RNA polymerase II transcription subunit 15a... 0.07 OrthoFinder output from all 47 species
MA_9416g0010 No alias Mediator of RNA polymerase II transcription subunit 15a... 0.04 OrthoFinder output from all 47 species
Ore_g36747 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR036546 MED15_KIX 8 85
No external refs found!