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  5. Gb_23722

Gb_23722 (AXR6, ATCUL1, CUL1)


Aliases : AXR6, ATCUL1, CUL1

Description : scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23722
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Als_g52906 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Ceric.28G004800.1 AXR6, ATCUL1,... scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.191 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Cre17.g734400 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01010966001 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
MA_17031g0010 AXR6, ATCUL1, CUL1 no description available(sp|q5zc88|cul1_orysj : 263.0) 0.03 OrthoFinder output from all 47 species
Mp8g03110.1 AXR6, ATCUL1, CUL1 scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 OrthoFinder output from all 47 species
Pir_g01372 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ppi_g02289 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Smo173394 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc01g067100.4.1 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 OrthoFinder output from all 47 species
Zm00001e040431_P004 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR001373 Cullin_N 24 647
IPR019559 Cullin_neddylation_domain 674 735
No external refs found!