1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_23363

Gb_23363


Description : plastidial mRNA chaperone (RLSB/BSF)


Gene families : OG0002842 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002842_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_23363

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00066980 evm_27.TU.AmTr_v1... 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea 0.04 OrthoFinder output from all 47 species
Ala_g31939 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g16982 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17119 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.39G005900.1 Ceric.39G005900 mRNA chaperone *(RLSB/BSF) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g04128 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g09799 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g45920.1 LOC_Os05g45920 plastidial mRNA chaperone (RLSB/BSF) 0.04 OrthoFinder output from all 47 species
Solyc04g072036.1.1 Solyc04g072036 plastidial mRNA chaperone (RLSB/BSF) 0.04 OrthoFinder output from all 47 species
Spa_g17865 No alias mRNA chaperone *(RLSB/BSF) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032251_P002 Zm00001e032251 plastidial mRNA chaperone (RLSB/BSF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0002161 aminoacyl-tRNA editing activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003029 S1_domain 391 461
No external refs found!