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Description : NUP1/NUP136 nucleoporin of nuclear pore complex
Gene families : OG0002028 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002028_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_18080 | |
| Cluster | HCCA: Cluster_41 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT3G10650 | No alias | BEST Arabidopsis thaliana protein match is:... | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g011582 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g06113 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.05 | OrthoFinder output from all 47 species | |
| Als_g31899 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g08994 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0016.g014309 | No alias | not classified & original description: CDS=362-3427 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s2381.g111051 | No alias | not classified & original description: CDS=362-3427 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s2690.g112655 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g19670 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.07G044000.1 | Ceric.07G044000 | not classified & original description: pacid=50627215... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.08G016500.1 | Ceric.08G016500 | not classified & original description: pacid=50638572... | 0.06 | OrthoFinder output from all 47 species | |
| Ceric.1Z123400.1 | Ceric.1Z123400 | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.07 | OrthoFinder output from all 47 species | |
| Dac_g15117 | No alias | nuclear lamina CRWN-interacting protein *(KAKU4) &... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g49204 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g00971 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g04036 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g26942 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01034601001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.08 | OrthoFinder output from all 47 species | |
| Len_g30747 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g14234 | No alias | nuclear lamina CRWN-interacting protein *(KAKU4) &... | 0.07 | OrthoFinder output from all 47 species | |
| MA_87384g0020 | No alias | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| Mp3g05990.1 | No alias | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g14916 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g09860 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g28862 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g10463 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.04 | OrthoFinder output from all 47 species | |
| Pir_g66188 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0043.g012850 | No alias | not classified & original description: CDS=3-2681 | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g13887 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g19954 | No alias | nuclear lamina CRWN-interacting protein *(KAKU4) &... | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g51943 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Solyc05g055110.4.1 | Solyc05g055110 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.02 | OrthoFinder output from all 47 species | |
| Solyc11g006390.2.1 | Solyc11g006390 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g06717 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g07621 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.07 | OrthoFinder output from all 47 species | |
| Tin_g06136 | No alias | nucleoporin of nuclear pore complex *(NUP1/NUP136) &... | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e005928_P001 | Zm00001e005928 | NUP1/NUP136 nucleoporin of nuclear pore complex | 0.1 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0004674 | protein serine/threonine kinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006366 | transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
| BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
| BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
| BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |