Gb_16689 (AXR6, ATCUL1, CUL1)

Aliases : AXR6, ATCUL1, CUL1

Description : scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3 ligase complexes

Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_16689
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00258510	AXR6, ATCUL1,...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Adi_g087062	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Adi_g116543	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ala_g02578	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.05	OrthoFinder output from all 47 species
Als_g34097	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Als_g52906	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Aop_g01815	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Azfi_s0087.g042385	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Cba_g11839	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Ceric.27G015900.1	AXR6, ATCUL1,...	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Ceric.28G004800.1	AXR6, ATCUL1,...	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.05	OrthoFinder output from all 47 species
Cre17.g734400	AXR6, ATCUL1, CUL1	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Dcu_g04834	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.06	OrthoFinder output from all 47 species
Dde_g02972	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
GSVIVT01010966001	AXR6, ATCUL1, CUL1	Protein degradation.peptide tagging.Ubiquitin...	0.07	OrthoFinder output from all 47 species
LOC_Os01g27150.1	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.02	OrthoFinder output from all 47 species
Len_g08039	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Len_g59431	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.03	OrthoFinder output from all 47 species
Mp8g03110.1	AXR6, ATCUL1, CUL1	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.04	OrthoFinder output from all 47 species
Ore_g30275	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Pir_g01372	AXR6, ATCUL1, CUL1	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.06	OrthoFinder output from all 47 species
Sam_g12468	No alias	scaffold component *(CUL1) of SCF E3 ubiquitin ligase...	0.06	OrthoFinder output from all 47 species
Solyc09g074680.3.1	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.02	OrthoFinder output from all 47 species
Zm00001e027502_P001	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.04	OrthoFinder output from all 47 species
Zm00001e040431_P004	AXR6, ATCUL1,...	scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
MF	GO:0031625	ubiquitin protein ligase binding	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
MF	GO:0061608	nuclear import signal receptor activity	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019559	Cullin_neddylation_domain	674	736
IPR001373	Cullin_N	24	647

External Links

No external refs found!

Gb_16689 (AXR6, ATCUL1, CUL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation