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Gb_16576


Description : DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica (sp|q0inc5|rh28_orysj : 769.0)


Gene families : OG0004454 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004454_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_16576

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00103870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Ceric.09G038600.1 Ceric.09G038600 not classified & original description: pacid=50586912... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
Dde_g26304 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g09979 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
LOC_Os12g29660.1 LOC_Os12g29660 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Lfl_g05640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_40229g0010 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_956864g0010 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp4g21330.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Ore_g27091 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59335 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13644 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g081580.4.1 Solyc04g081580 DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Tin_g11999 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e010143_P002 Zm00001e010143 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 229 399
IPR001650 Helicase_C 440 545
No external refs found!