1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_15078

Gb_15078


Description : DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica (sp|q2r1m8|rh52c_orysj : 757.0)


Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_15078

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00136740 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00133p00101570 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Aev_g21917 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Aop_g17524 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Azfi_s0011.g012710 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Azfi_s0333.g065464 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Ceric.08G007800.1 Ceric.08G007800 sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020544.5 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
GSVIVT01033437001 No alias DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_00348 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os06g40020.1 LOC_Os06g40020 DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_181586g0010 No alias DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Msp_g08556 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Ore_g30360 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Pir_g08966 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.03 OrthoFinder output from all 47 species
Sam_g15279 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 OrthoFinder output from all 47 species
Sam_g19979 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.02 OrthoFinder output from all 47 species
Smo267628 No alias DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Solyc03g052980.3.1 Solyc03g052980 DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e011397_P001 Zm00001e011397 DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e021229_P001 Zm00001e021229 DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004652 polynucleotide adenylyltransferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 396 511
IPR011545 DEAD/DEAH_box_helicase_dom 181 361
No external refs found!