1. Home
  2. Species
  3. Ginkgo biloba
  4. Sequence
  5. Gb_08232

Gb_08232 (EMB2765)


Aliases : EMB2765

Description : Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana (sp|q9fjr0|rent1_arath : 100.0)


Gene families : OG0002062 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002062_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08232
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000114.27 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g23614 SDE3 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g25530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435198g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_5233741g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp5g14410.1 No alias Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Spa_g23408 SDE3 not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 904 1109
IPR041677 DNA2/NAM7_AAA_11 462 892
No external refs found!