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  5. Gb_05747

Gb_05747 (PDE322, CP33)


Aliases : PDE322, CP33

Description : component psPSRP2 of small ribosomal subunit proteome


Gene families : OG0000715 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000715_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05747

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00197820 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AMTR_s00002p00271280 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 OrthoFinder output from all 47 species
AMTR_s00061p00032260 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
AMTR_s00061p00142700 ATRBP31, CP31,... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00166p00060690 ATRBP31, CP31,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AT2G35410 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.06 OrthoFinder output from all 47 species
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.03 OrthoFinder output from all 47 species
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.03 OrthoFinder output from all 47 species
Aev_g10264 ATRBP31, CP31,... plastidial ribonucleoprotein *(CP33a) & original... 0.07 OrthoFinder output from all 47 species
Ala_g12603 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g39448 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g05873 ATRBP31, CP31,... not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g07067 ATRBP31, CP31,... not classified & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g07142 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14081 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene12453.t1 Aspi01Gene12453 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Azfi_s0159.g053948 ATRBP31, CP31,... not classified & original description: CDS=143-1057 0.03 OrthoFinder output from all 47 species
Azfi_s1959.g108384 ATRBP31, CP31,... not classified & original description: CDS=169-1023 0.03 OrthoFinder output from all 47 species
Ceric.38G067800.1 ATRBP31, CP31,... not classified & original description: pacid=50580282... 0.04 OrthoFinder output from all 47 species
Dac_g21785 ATRBP31, CP31,... not classified & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g00421 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g00942 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g05650 ATRBP31, CP31,... not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10561 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01007596001 CP31B RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
GSVIVT01013146001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.03 OrthoFinder output from all 47 species
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.08 OrthoFinder output from all 47 species
GSVIVT01032361001 CP31B RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
LOC_Os02g57010.1 LOC_Os02g57010 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
LOC_Os04g50110.1 LOC_Os04g50110 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os07g06450.1 PDE322, CP33,... RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
LOC_Os08g44290.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.05 OrthoFinder output from all 47 species
LOC_Os09g39180.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.07 OrthoFinder output from all 47 species
MA_10434075g0010 CP31B component psPSRP2 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
MA_136464g0010 ATRBP31, CP31,... 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 OrthoFinder output from all 47 species
MA_474396g0010 ATRBP31, CP31,... RNA editing factor (CP31) 0.07 OrthoFinder output from all 47 species
MA_482994g0010 CP31B 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.12 OrthoFinder output from all 47 species
MA_65183g0010 No alias component psPSRP2 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Mp3g24820.1 CP31B RNA-binding protein CP31B, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.08 OrthoFinder output from all 47 species
Nbi_g02906 ATRBP31, CP31,... not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g06962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19962 CP31B not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27196 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06203 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.04 OrthoFinder output from all 47 species
Pnu_g33947 No alias plastidial ribonucleoprotein *(CP33a) & original... 0.04 OrthoFinder output from all 47 species
Pp3c12_9890V3.1 Pp3c12_9890 chloroplast RNA-binding protein 29 0.01 OrthoFinder output from all 47 species
Ppi_g02835 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g18180 ATRBP31, CP31,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0062.g015482 ATRBP31, CP31,... not classified & original description: CDS=157-1524 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021464 CP31B not classified & original description: CDS=19-840 0.05 OrthoFinder output from all 47 species
Solyc03g111840.3.1 ATRBP31, CP31,... RNA editing factor (CP31) 0.03 OrthoFinder output from all 47 species
Solyc08g076840.3.1 Solyc08g076840 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 OrthoFinder output from all 47 species
Solyc09g007850.3.1 Solyc09g007850 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Solyc09g090960.4.1 Solyc09g090960 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.03 OrthoFinder output from all 47 species
Spa_g07687 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08465 ATRBP31, CP31,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g05046 ATRBP31, CP31,... not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g09087 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e001824_P002 Zm00001e001824 RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e003947_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.02 OrthoFinder output from all 47 species
Zm00001e007101_P002 Zm00001e007101 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 OrthoFinder output from all 47 species
Zm00001e016211_P001 Zm00001e016211 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.04 OrthoFinder output from all 47 species
Zm00001e022086_P002 ATRBP31, CP31,... RNA editing factor (CP31) 0.04 OrthoFinder output from all 47 species
Zm00001e033465_P001 ATRBP31, CP31,... RNA editing factor (CP31) 0.04 OrthoFinder output from all 47 species
Zm00001e033636_P003 Zm00001e033636 component psPSRP2 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 274 344
IPR000504 RRM_dom 170 240
No external refs found!