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Gb_04803 (AMY2, ATAMY2)


Aliases : AMY2, ATAMY2

Description : alpha amylase


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04803
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
Adi_g021932 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01031742001 AMY1, ATAMY1 Alpha-amylase OS=Vigna mungo 0.03 OrthoFinder output from all 47 species
Gb_30449 AMY1, ATAMY1 alpha amylase 0.01 OrthoFinder output from all 47 species
LOC_Os09g28400.1 AMY1, ATAMY1,... alpha amylase 0.04 OrthoFinder output from all 47 species
Len_g16715 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g24732 AMY1, ATAMY1 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g22120.1 AMY2, ATAMY2 alpha amylase 0.02 OrthoFinder output from all 47 species
Solyc05g007070.2.1 AMY3, ATAMY3,... alpha amylase 0.02 OrthoFinder output from all 47 species
Zm00001e009946_P001 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
Zm00001e015947_P002 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 362 417
IPR006047 Glyco_hydro_13_cat_dom 49 337
No external refs found!