Gb_03648 (ELF7)

Aliases : ELF7

Description : component ELF7/PAF1 of PAF1C transcription initiation and elongation complex

Gene families : OG0004313 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004313_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_03648
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00252660	ELF7,...	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Adi_g017539	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Adi_g056601	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Adi_g074112	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Adi_g074113	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Aev_g09992	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Ala_g13490	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Als_g05050	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.06	OrthoFinder output from all 47 species
Aop_g31137	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.05	OrthoFinder output from all 47 species
Azfi_s0084.g038980	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Ceric.11G050600.1	ELF7, Ceric.11G050600	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Cre12.g520250	ELF7	RNA biosynthesis.RNA polymerase II-dependent...	0.05	OrthoFinder output from all 47 species
Dcu_g23418	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.06	OrthoFinder output from all 47 species
LOC_Os08g06070.1	ELF7, LOC_Os08g06070	component ELF7/PAF1 of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Len_g14682	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Lfl_g03423	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Mp7g16470.1	ELF7	component ELF7/PAF1 of PAF1C transcription initiation...	0.04	OrthoFinder output from all 47 species
Nbi_g06303	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Ore_g45153	No alias	not classified & original description: none	0.09	OrthoFinder output from all 47 species
Ppi_g54336	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.05	OrthoFinder output from all 47 species
Smo441016	ELF7	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Spa_g08815	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.02	OrthoFinder output from all 47 species
Spa_g33775	ELF7	component *(ELF7/PAF1) of PAF1C transcription initiation...	0.03	OrthoFinder output from all 47 species
Zm00001e040227_P001	ELF7, Zm00001e040227	component ELF7/PAF1 of PAF1C transcription initiation...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	None	Extended
BP	GO:0006368	transcription elongation by RNA polymerase II	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
CC	GO:0008023	transcription elongation factor complex	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016570	histone modification	IEA	Interproscan
CC	GO:0016593	Cdc73/Paf1 complex	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0017069	snRNA binding	IEP	HCCA
MF	GO:0017070	U6 snRNA binding	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0030623	U5 snRNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007133	RNA_pol_II-assoc_Paf1	378	741

External Links

No external refs found!

Gb_03648 (ELF7)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation