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  5. Gb_02094

Gb_02094


Description : component TRM732 of TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex


Gene families : OG0006426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_02094
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT3G55160 No alias unknown protein; EXPRESSED IN: 11 plant structures;... 0.03 OrthoFinder output from all 47 species
Aev_g20224 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.05 OrthoFinder output from all 47 species
Azfi_s0208.g058004 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Ceric.12G034300.1 Ceric.12G034300 component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Dcu_g13115 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.04 OrthoFinder output from all 47 species
Len_g23489 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
MA_177186g0010 No alias component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.06 OrthoFinder output from all 47 species
MA_41436g0010 No alias component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Ore_g33228 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.06 OrthoFinder output from all 47 species
Sam_g18072 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Smo74297 No alias RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Solyc03g062650.3.1 Solyc03g062650 component TRM732 of TRM7-TRM732/TRM734 tRNA... 0.03 OrthoFinder output from all 47 species
Spa_g15714 No alias component *(TRM732) of TRM7-TRM732/TRM734 tRNA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019442 THADA/TRM732_DUF2428 1 167
IPR000357 HEAT 535 563
No external refs found!