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  5. Cpa|evm.model.tig00021435.42

Cpa|evm.model.tig00021435.42


Description : GDT1-like protein 5 OS=Oryza sativa subsp. japonica


Gene families : OG0000681 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000681_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021435.42

Target Alias Description ECC score Gene Family Method Actions
AT5G36290 No alias Uncharacterized protein family (UPF0016) 0.01 OrthoFinder output from all 47 species
Adi_g075330 No alias manganese/calcium cation transporter *(BICAT) & original... 0.02 OrthoFinder output from all 47 species
Adi_g108652 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g48797 No alias manganese/calcium cation transporter *(BICAT) & original... 0.01 OrthoFinder output from all 47 species
Dcu_g02609 No alias manganese/calcium cation transporter *(BICAT) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os11g34180.1 LOC_Os11g34180 manganese/calcium cation transporter (BICAT) 0.01 OrthoFinder output from all 47 species
Len_g08558 No alias manganese/calcium cation transporter *(BICAT) & original... 0.01 OrthoFinder output from all 47 species
Lfl_g28710 No alias manganese/calcium cation transporter *(BICAT) & original... 0.01 OrthoFinder output from all 47 species
Nbi_g04674 No alias manganese/calcium cation transporter *(BICAT) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017813 No alias manganese/calcium cation transporter *(BICAT) & original... 0.01 OrthoFinder output from all 47 species
Spa_g54955 No alias manganese/calcium cation transporter *(BICAT) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e008707_P003 Zm00001e008707 manganese/calcium cation transporter (BICAT) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR001727 Gdt1 210 283
IPR001727 Gdt1 71 144
No external refs found!