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  5. Cpa|evm.model.tig00020780.71

Cpa|evm.model.tig00020780.71 (HIS1-3)


Aliases : HIS1-3

No description available


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020780.71
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.01 OrthoFinder output from all 47 species
Adi_g029498 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g047348 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g052669 No alias linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g104846 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g31757 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g23326 HIS1-3 linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g08116 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g05135 HIS1-3 linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36461 HIS1-3 linker histone *(H1) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g37623 No alias linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene42128.t1 HIS1-3, Aspi01Gene42128 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G013600.1 HIS1-3, Ceric.12G013600 linker histone *(H1) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.30G041600.1 Ceric.30G041600 linker histone *(H1) & original description:... 0.01 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.01 OrthoFinder output from all 47 species
Dac_g20797 HIS1-3 linker histone *(H1) & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g00585 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05478 No alias linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.04 OrthoFinder output from all 47 species
GSVIVT01036230001 No alias Chromatin organisation.histones.H1 linker histone 0.01 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.01 OrthoFinder output from all 47 species
Gb_03348 HIS1-3 linker histone (H1) 0.01 OrthoFinder output from all 47 species
Gb_06547 HIS1-3 linker histone (H1) 0.01 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Len_g04604 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g23782 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g54319 No alias linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
MA_102457g0010 No alias linker histone (H1) 0.02 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.02 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.01 OrthoFinder output from all 47 species
MA_877599g0010 No alias linker histone (H1) 0.04 OrthoFinder output from all 47 species
Msp_g09818 HIS1-3 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g04093 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11329 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g36914 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g18453 HIS1-3 linker histone *(H1) & original description: none 0.01 OrthoFinder output from all 47 species
Pp3c18_14270V3.1 Pp3c18_14270 winged-helix DNA-binding transcription factor family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004314 No alias linker histone *(H1) & original description: CDS=99-770 0.02 OrthoFinder output from all 47 species
Sam_g11041 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g11042 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Spa_g09322 HIS1-3 linker histone *(H1) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g09323 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09324 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g18792 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g31027 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50934 HIS1-3 linker histone *(H1) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g50935 HIS1-3 linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g01715 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e007189_P001 HIS1-3, Zm00001e007189 linker histone (H1) 0.01 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Zm00001e011859_P001 Zm00001e011859 linker histone (H1) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 47 114
No external refs found!