Coexpression cluster: Cluster_19 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003677 DNA binding 9.33% (18/193) 3.1 0.0 0.0
GO:0005488 binding 31.61% (61/193) 1.29 0.0 0.0
GO:0006259 DNA metabolic process 8.29% (16/193) 3.17 0.0 0.0
GO:0043226 organelle 7.25% (14/193) 3.2 0.0 0.0
GO:0043229 intracellular organelle 7.25% (14/193) 3.21 0.0 0.0
GO:0006270 DNA replication initiation 2.59% (5/193) 6.32 0.0 0.0
GO:0097159 organic cyclic compound binding 19.17% (37/193) 1.57 0.0 0.0
GO:1901363 heterocyclic compound binding 19.17% (37/193) 1.57 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 8.81% (17/193) 2.6 0.0 0.0
GO:0005634 nucleus 4.66% (9/193) 4.06 0.0 0.0
GO:0003676 nucleic acid binding 11.4% (22/193) 2.09 0.0 0.0
GO:0032559 adenyl ribonucleotide binding 11.92% (23/193) 1.97 0.0 1e-06
GO:0005524 ATP binding 11.92% (23/193) 1.98 0.0 1e-06
GO:0090304 nucleic acid metabolic process 9.33% (18/193) 2.32 0.0 1e-06
GO:0036094 small molecule binding 13.99% (27/193) 1.76 0.0 1e-06
GO:0043227 membrane-bounded organelle 4.66% (9/193) 3.62 0.0 1e-06
GO:0043231 intracellular membrane-bounded organelle 4.66% (9/193) 3.65 0.0 1e-06
GO:0000166 nucleotide binding 13.47% (26/193) 1.77 0.0 1e-06
GO:1901265 nucleoside phosphate binding 13.47% (26/193) 1.77 0.0 1e-06
GO:0030554 adenyl nucleotide binding 11.92% (23/193) 1.91 0.0 1e-06
GO:0097367 carbohydrate derivative binding 12.95% (25/193) 1.83 0.0 1e-06
GO:0035639 purine ribonucleoside triphosphate binding 12.44% (24/193) 1.81 0.0 1e-06
GO:0032555 purine ribonucleotide binding 12.44% (24/193) 1.8 0.0 1e-06
GO:0043168 anion binding 12.95% (25/193) 1.73 0.0 2e-06
GO:0032553 ribonucleotide binding 12.44% (24/193) 1.77 0.0 2e-06
GO:0017076 purine nucleotide binding 12.44% (24/193) 1.75 0.0 2e-06
GO:0006996 organelle organization 3.11% (6/193) 4.26 1e-06 6e-06
GO:0006139 nucleobase-containing compound metabolic process 9.84% (19/193) 1.88 1e-06 1.1e-05
GO:0003674 molecular_function 35.75% (69/193) 0.78 1e-06 1.2e-05
GO:0043167 ion binding 14.51% (28/193) 1.41 2e-06 2.1e-05
GO:0051276 chromosome organization 2.59% (5/193) 4.51 2e-06 2.1e-05
GO:0046483 heterocycle metabolic process 9.84% (19/193) 1.8 3e-06 2.3e-05
GO:0006725 cellular aromatic compound metabolic process 9.84% (19/193) 1.79 3e-06 2.3e-05
GO:1901360 organic cyclic compound metabolic process 9.84% (19/193) 1.77 4e-06 2.8e-05
GO:0005694 chromosome 2.07% (4/193) 5.09 5e-06 3.5e-05
GO:0140097 catalytic activity, acting on DNA 3.11% (6/193) 3.73 6e-06 4.5e-05
GO:0005515 protein binding 13.47% (26/193) 1.35 1.1e-05 8.1e-05
GO:0034641 cellular nitrogen compound metabolic process 9.84% (19/193) 1.63 1.4e-05 9.9e-05
GO:0110165 cellular anatomical entity 8.29% (16/193) 1.82 1.5e-05 0.000101
GO:0016043 cellular component organization 3.63% (7/193) 3.12 1.7e-05 0.000112
GO:0071840 cellular component organization or biogenesis 3.63% (7/193) 2.96 3.4e-05 0.000223
GO:0140640 catalytic activity, acting on a nucleic acid 4.66% (9/193) 2.48 3.7e-05 0.000235
GO:0006269 DNA replication, synthesis of RNA primer 1.04% (2/193) 7.0 6.1e-05 0.000377
GO:0043170 macromolecule metabolic process 11.4% (22/193) 1.3 9.3e-05 0.000567
GO:0005815 microtubule organizing center 1.04% (2/193) 6.41 0.000181 0.001052
GO:0003896 DNA primase activity 1.04% (2/193) 6.41 0.000181 0.001052
GO:0006260 DNA replication 2.07% (4/193) 3.68 0.000265 0.001505
GO:0044237 cellular metabolic process 11.92% (23/193) 1.15 0.000306 0.001703
GO:0016779 nucleotidyltransferase activity 2.59% (5/193) 3.06 0.000346 0.001887
GO:0006275 regulation of DNA replication 1.04% (2/193) 6.0 0.000361 0.001888
GO:0051052 regulation of DNA metabolic process 1.04% (2/193) 6.0 0.000361 0.001888
GO:0009987 cellular process 16.58% (32/193) 0.9 0.000447 0.002293
GO:0005575 cellular_component 8.81% (17/193) 1.33 0.00046 0.002317
GO:0006281 DNA repair 2.59% (5/193) 2.78 0.000824 0.004073
GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity 1.04% (2/193) 5.41 0.000892 0.004332
GO:0006974 cellular response to DNA damage stimulus 2.59% (5/193) 2.72 0.000996 0.004508
GO:0033554 cellular response to stress 2.59% (5/193) 2.72 0.000996 0.004508
GO:0051716 cellular response to stimulus 2.59% (5/193) 2.72 0.000996 0.004508
GO:0006807 nitrogen compound metabolic process 11.92% (23/193) 1.02 0.000964 0.004598
GO:0003887 DNA-directed DNA polymerase activity 1.55% (3/193) 3.83 0.001196 0.005151
GO:0043228 non-membrane-bounded organelle 2.59% (5/193) 2.66 0.001194 0.005227
GO:0043232 intracellular non-membrane-bounded organelle 2.59% (5/193) 2.66 0.001194 0.005227
GO:0034061 DNA polymerase activity 1.55% (3/193) 3.78 0.001332 0.005646
GO:0006950 response to stress 2.59% (5/193) 2.59 0.001481 0.006177
GO:0015631 tubulin binding 2.07% (4/193) 2.83 0.002456 0.010088
GO:0050896 response to stimulus 2.59% (5/193) 2.41 0.002551 0.010321
GO:0044238 primary metabolic process 11.92% (23/193) 0.91 0.002782 0.011087
GO:0008092 cytoskeletal protein binding 2.07% (4/193) 2.73 0.003134 0.012307
GO:0030983 mismatched DNA binding 1.04% (2/193) 4.54 0.003189 0.012339
GO:0006265 DNA topological change 1.04% (2/193) 4.41 0.003807 0.013924
GO:0006298 mismatch repair 1.04% (2/193) 4.41 0.003807 0.013924
GO:0071103 DNA conformation change 1.04% (2/193) 4.41 0.003807 0.013924
GO:0003916 DNA topoisomerase activity 1.04% (2/193) 4.41 0.003807 0.013924
GO:0071704 organic substance metabolic process 11.92% (23/193) 0.84 0.004806 0.01734
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins 0.52% (1/193) 7.0 0.007813 0.017984
GO:0051097 negative regulation of helicase activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:0006231 dTMP biosynthetic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009129 pyrimidine nucleoside monophosphate metabolic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0051095 regulation of helicase activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:0031262 Ndc80 complex 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009162 deoxyribonucleoside monophosphate metabolic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009157 deoxyribonucleoside monophosphate biosynthetic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0043462 regulation of ATP-dependent activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009263 deoxyribonucleotide biosynthetic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009394 2'-deoxyribonucleotide metabolic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system 0.52% (1/193) 7.0 0.007813 0.017984
GO:0019692 deoxyribose phosphate metabolic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0046073 dTMP metabolic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0046385 deoxyribose phosphate biosynthetic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0031144 proteasome localization 0.52% (1/193) 7.0 0.007813 0.017984
GO:0050797 thymidylate synthase (FAD) activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009219 pyrimidine deoxyribonucleotide metabolic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0032780 negative regulation of ATP-dependent activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0042555 MCM complex 0.52% (1/193) 7.0 0.007813 0.017984
GO:0009265 2'-deoxyribonucleotide biosynthetic process 0.52% (1/193) 7.0 0.007813 0.017984
GO:0007049 cell cycle 0.52% (1/193) 7.0 0.007813 0.017984
GO:0000775 chromosome, centromeric region 0.52% (1/193) 7.0 0.007813 0.017984
GO:0019206 nucleoside kinase activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:0000776 kinetochore 0.52% (1/193) 7.0 0.007813 0.017984
GO:0098687 chromosomal region 0.52% (1/193) 7.0 0.007813 0.017984
GO:0019136 deoxynucleoside kinase activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:0019905 syntaxin binding 0.52% (1/193) 7.0 0.007813 0.017984
GO:0000149 SNARE binding 0.52% (1/193) 7.0 0.007813 0.017984
GO:0001882 nucleoside binding 0.52% (1/193) 7.0 0.007813 0.017984
GO:0000278 mitotic cell cycle 0.52% (1/193) 7.0 0.007813 0.017984
GO:1905462 regulation of DNA duplex unwinding 0.52% (1/193) 7.0 0.007813 0.017984
GO:0004797 thymidine kinase activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:1905775 negative regulation of DNA helicase activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:1905774 regulation of DNA helicase activity 0.52% (1/193) 7.0 0.007813 0.017984
GO:1905463 negative regulation of DNA duplex unwinding 0.52% (1/193) 7.0 0.007813 0.017984
GO:0008094 ATP-dependent activity, acting on DNA 1.04% (2/193) 4.19 0.005195 0.018495
GO:0008150 biological_process 17.62% (34/193) 0.57 0.01165 0.026585
GO:0008152 metabolic process 11.92% (23/193) 0.72 0.012581 0.028467
GO:0031503 protein-containing complex localization 0.52% (1/193) 6.0 0.015565 0.032984
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process 0.52% (1/193) 6.0 0.015565 0.032984
GO:0007059 chromosome segregation 0.52% (1/193) 6.0 0.015565 0.032984
GO:0010498 proteasomal protein catabolic process 0.52% (1/193) 6.0 0.015565 0.032984
GO:0034453 microtubule anchoring 0.52% (1/193) 6.0 0.015565 0.032984
GO:0009262 deoxyribonucleotide metabolic process 0.52% (1/193) 6.0 0.015565 0.032984
GO:2001251 negative regulation of chromosome organization 0.52% (1/193) 6.0 0.015565 0.032984
GO:0008017 microtubule binding 1.55% (3/193) 2.54 0.014987 0.033627
GO:0016772 transferase activity, transferring phosphorus-containing groups 4.66% (9/193) 1.2 0.017178 0.036114
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 1.04% (2/193) 3.25 0.018751 0.039113
GO:0005509 calcium ion binding 1.55% (3/193) 2.4 0.019581 0.040529
GO:0009124 nucleoside monophosphate biosynthetic process 0.52% (1/193) 5.41 0.023258 0.044675
GO:0019205 nucleobase-containing compound kinase activity 0.52% (1/193) 5.41 0.023258 0.044675
GO:0043086 negative regulation of catalytic activity 0.52% (1/193) 5.41 0.023258 0.044675
GO:0044092 negative regulation of molecular function 0.52% (1/193) 5.41 0.023258 0.044675
GO:0009123 nucleoside monophosphate metabolic process 0.52% (1/193) 5.41 0.023258 0.044675
GO:0006221 pyrimidine nucleotide biosynthetic process 0.52% (1/193) 5.41 0.023258 0.044675
GO:0006220 pyrimidine nucleotide metabolic process 0.52% (1/193) 5.41 0.023258 0.044675
GO:0099080 supramolecular complex 0.52% (1/193) 5.41 0.023258 0.044675
GO:0034062 5'-3' RNA polymerase activity 1.04% (2/193) 3.09 0.022887 0.046647
GO:0097747 RNA polymerase activity 1.04% (2/193) 3.09 0.022887 0.046647
GO:0016740 transferase activity 6.22% (12/193) 0.93 0.024563 0.046845
GO:0140657 ATP-dependent activity 2.07% (4/193) 1.85 0.025487 0.048262
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Actinostachys digitata HCCA Cluster_278 0.035 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_69 0.02 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_2 0.033 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_7 0.017 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_19 0.021 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_54 0.032 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_53 0.017 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_73 0.015 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_109 0.024 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_50 0.081 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_18 0.067 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_50 0.049 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_10 0.015 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_21 0.031 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_63 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_138 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_142 0.02 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_147 0.057 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_34 0.022 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_38 0.046 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_100 0.054 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_5 0.022 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_43 0.018 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_44 0.018 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_55 0.017 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_58 0.019 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_59 0.027 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_87 0.022 OrthoFinder output from all 47 species Compare
Cyanophora paradoxa HCCA Cluster_89 0.016 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_6 0.016 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_18 0.1 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_59 0.018 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_53 0.081 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_121 0.021 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_130 0.028 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_18 0.047 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_139 0.04 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_32 0.027 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_7 0.018 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_11 0.056 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_51 0.036 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_61 0.022 OrthoFinder output from all 47 species Compare
Gingko biloba HCCA Cluster_141 0.065 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_7 0.061 OrthoFinder output from all 47 species Compare
Lindsaea ensifolia HCCA Cluster_154 0.038 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_66 0.045 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_9 0.023 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_109 0.062 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_10 0.018 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_20 0.105 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_34 0.024 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_17 0.056 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_143 0.038 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_78 0.045 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_27 0.053 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_83 0.098 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_170 0.023 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_22 0.025 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_79 0.073 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_173 0.035 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_232 0.028 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_25 0.026 OrthoFinder output from all 47 species Compare
Pyrrosia piloselloides HCCA Cluster_233 0.018 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_11 0.045 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_21 0.017 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_19 0.053 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_20 0.016 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_22 0.029 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_27 0.022 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_21 0.063 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_22 0.035 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_53 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_74 0.017 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_129 0.026 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_130 0.024 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_31 0.025 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_34 0.023 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_86 0.018 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_9 0.039 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_84 0.017 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_138 0.032 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_146 0.043 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_37 0.078 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_65 0.032 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_85 0.102 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_15 0.091 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_167 0.029 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_31 0.022 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_85 0.092 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_129 0.016 OrthoFinder output from all 47 species Compare
Sequences (193) (download table)

InterPro Domains

GO Terms

Family Terms