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  5. Cpa|evm.model.tig00020629.98

Cpa|evm.model.tig00020629.98 (GCN3, ATGCN3)


Aliases : GCN3, ATGCN3

Description : ABC transporter F family member 3 OS=Arabidopsis thaliana


Gene families : OG0006468 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006468_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020629.98
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00263550 GCN3, ATGCN3,... ABC transporter F family member 3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G64550 GCN3, ATGCN3 general control non-repressible 3 0.04 OrthoFinder output from all 47 species
Aev_g18277 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.03 OrthoFinder output from all 47 species
Als_g04408 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.01 OrthoFinder output from all 47 species
Aob_g02312 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.01 OrthoFinder output from all 47 species
Cba_g02053 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.02 OrthoFinder output from all 47 species
Ceric.31G006600.1 GCN3, ATGCN3,... regulatory protein *(GCN20) of eIF2-alpha kinase... 0.05 OrthoFinder output from all 47 species
Cre11.g478128 GCN3, ATGCN3 ABC transporter F family member 3 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
Dcu_g01906 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.01 OrthoFinder output from all 47 species
Dde_g21674 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.02 OrthoFinder output from all 47 species
LOC_Os02g58020.1 GCN3, ATGCN3,... ABC transporter F family member 3 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Len_g02885 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.02 OrthoFinder output from all 47 species
MA_10435195g0010 GCN3, ATGCN3 ABC transporter F family member 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_8312073g0010 GCN3, ATGCN3 ABC transporter F family member 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g18200.1 GCN3, ATGCN3 ABC transporter F family member 3 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Pir_g19154 GCN3, ATGCN3 regulatory protein *(GCN20) of eIF2-alpha kinase... 0.02 OrthoFinder output from all 47 species
Sam_g27059 No alias regulatory protein *(GCN20) of eIF2-alpha kinase... 0.01 OrthoFinder output from all 47 species
Smo175495 GCN3, ATGCN3 ABC transporter F family member 3 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Zm00001e016263_P001 GCN3, ATGCN3,... ABC transporter F family member 3 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR032781 ABC_tran_Xtn 413 496
IPR003439 ABC_transporter-like_ATP-bd 191 374
IPR003439 ABC_transporter-like_ATP-bd 528 602
No external refs found!