Coexpression cluster: Cluster_13 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 46.53% (67/144) 1.16 0.0 0.0
GO:1901363 heterocyclic compound binding 22.22% (32/144) 1.78 0.0 0.0
GO:0097159 organic cyclic compound binding 22.22% (32/144) 1.78 0.0 0.0
GO:0005488 binding 30.56% (44/144) 1.24 0.0 2e-06
GO:0003676 nucleic acid binding 12.5% (18/144) 2.22 0.0 4e-06
GO:0003824 catalytic activity 22.92% (33/144) 1.27 1e-06 6.9e-05
GO:0016741 transferase activity, transferring one-carbon groups 4.86% (7/144) 3.57 2e-06 9.3e-05
GO:0008152 metabolic process 18.06% (26/144) 1.32 1.3e-05 0.000326
GO:0016070 RNA metabolic process 6.25% (9/144) 2.72 1e-05 0.000334
GO:0006520 amino acid metabolic process 4.17% (6/144) 3.48 1.7e-05 0.000338
GO:0050661 NADP binding 2.08% (3/144) 5.84 1.6e-05 0.000345
GO:0043436 oxoacid metabolic process 4.86% (7/144) 3.21 1.1e-05 0.000349
GO:0006082 organic acid metabolic process 4.86% (7/144) 3.19 1.3e-05 0.000351
GO:0034660 ncRNA metabolic process 4.17% (6/144) 3.44 2e-05 0.000359
GO:1901360 organic cyclic compound metabolic process 10.42% (15/144) 1.85 1.9e-05 0.00036
GO:0006725 cellular aromatic compound metabolic process 10.42% (15/144) 1.87 1.6e-05 0.000369
GO:0019752 carboxylic acid metabolic process 4.86% (7/144) 3.24 1e-05 0.000375
GO:0016743 carboxyl- or carbamoyltransferase activity 1.39% (2/144) 7.42 3.4e-05 0.000489
GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity 1.39% (2/144) 7.42 3.4e-05 0.000489
GO:0044237 cellular metabolic process 14.58% (21/144) 1.44 3.1e-05 0.00049
GO:0036094 small molecule binding 12.5% (18/144) 1.6 2.9e-05 0.000491
GO:0017076 purine nucleotide binding 11.11% (16/144) 1.59 8.8e-05 0.001218
GO:0003743 translation initiation factor activity 2.08% (3/144) 5.01 0.000103 0.001358
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 2.08% (3/144) 4.84 0.000148 0.001805
GO:0044281 small molecule metabolic process 6.25% (9/144) 2.22 0.000146 0.001847
GO:0000166 nucleotide binding 11.11% (16/144) 1.49 0.000191 0.002154
GO:1901265 nucleoside phosphate binding 11.11% (16/144) 1.49 0.000191 0.002154
GO:0005852 eukaryotic translation initiation factor 3 complex 1.39% (2/144) 6.42 0.000201 0.002182
GO:0034641 cellular nitrogen compound metabolic process 9.72% (14/144) 1.61 0.00021 0.002204
GO:0046483 heterocycle metabolic process 9.03% (13/144) 1.67 0.000239 0.002341
GO:0008168 methyltransferase activity 3.47% (5/144) 3.17 0.000239 0.002419
GO:0016740 transferase activity 9.72% (14/144) 1.58 0.000265 0.002438
GO:0034470 ncRNA processing 2.78% (4/144) 3.69 0.00026 0.002468
GO:0006807 nitrogen compound metabolic process 13.89% (20/144) 1.25 0.000286 0.002553
GO:0006396 RNA processing 3.47% (5/144) 3.04 0.000363 0.003156
GO:0090079 translation regulator activity, nucleic acid binding 2.08% (3/144) 4.36 0.000406 0.003249
GO:0045182 translation regulator activity 2.08% (3/144) 4.36 0.000406 0.003249
GO:0008135 translation factor activity, RNA binding 2.08% (3/144) 4.36 0.000406 0.003249
GO:0043168 anion binding 10.42% (15/144) 1.42 0.000522 0.003872
GO:0003723 RNA binding 3.47% (5/144) 2.94 0.000511 0.003882
GO:0032040 small-subunit processome 1.39% (2/144) 5.84 0.000499 0.003886
GO:0071704 organic substance metabolic process 14.58% (21/144) 1.13 0.000562 0.004071
GO:0030554 adenyl nucleotide binding 9.03% (13/144) 1.51 0.000679 0.004693
GO:0009073 aromatic amino acid family biosynthetic process 1.39% (2/144) 5.62 0.000695 0.004697
GO:0008150 biological_process 21.53% (31/144) 0.86 0.000676 0.004777
GO:0006399 tRNA metabolic process 2.78% (4/144) 3.21 0.000929 0.005882
GO:1901566 organonitrogen compound biosynthetic process 4.17% (6/144) 2.41 0.000961 0.005964
GO:0030684 preribosome 1.39% (2/144) 5.42 0.000923 0.005973
GO:0009987 cellular process 17.36% (25/144) 0.96 0.000912 0.006024
GO:0009072 aromatic amino acid metabolic process 1.39% (2/144) 5.1 0.001473 0.008955
GO:0090304 nucleic acid metabolic process 6.25% (9/144) 1.74 0.001571 0.009365
GO:0022613 ribonucleoprotein complex biogenesis 1.39% (2/144) 4.96 0.001793 0.010095
GO:0042254 ribosome biogenesis 1.39% (2/144) 4.96 0.001793 0.010095
GO:0006139 nucleobase-containing compound metabolic process 7.64% (11/144) 1.51 0.001746 0.01021
GO:0035639 purine ribonucleoside triphosphate binding 9.03% (13/144) 1.35 0.001867 0.010318
GO:0032555 purine ribonucleotide binding 9.03% (13/144) 1.34 0.001982 0.010758
GO:0044085 cellular component biogenesis 1.39% (2/144) 4.84 0.002144 0.011433
GO:1901564 organonitrogen compound metabolic process 9.03% (13/144) 1.32 0.002251 0.011798
GO:0043167 ion binding 11.81% (17/144) 1.11 0.002329 0.012002
GO:0032553 ribonucleotide binding 9.03% (13/144) 1.31 0.002385 0.012084
GO:0009058 biosynthetic process 6.25% (9/144) 1.65 0.002472 0.012119
GO:0097367 carbohydrate derivative binding 9.03% (13/144) 1.3 0.002455 0.012233
GO:0016874 ligase activity 2.78% (4/144) 2.79 0.002716 0.013108
GO:0005737 cytoplasm 2.08% (3/144) 3.42 0.00277 0.013156
GO:0019438 aromatic compound biosynthetic process 4.17% (6/144) 2.09 0.003012 0.014086
GO:0033014 tetrapyrrole biosynthetic process 1.39% (2/144) 4.42 0.003838 0.017416
GO:1901362 organic cyclic compound biosynthetic process 4.17% (6/144) 2.02 0.003817 0.01758
GO:0044238 primary metabolic process 12.5% (18/144) 0.97 0.004614 0.020629
GO:0070646 protein modification by small protein removal 1.39% (2/144) 4.1 0.005986 0.023328
GO:0016072 rRNA metabolic process 1.39% (2/144) 4.1 0.005986 0.023328
GO:0006364 rRNA processing 1.39% (2/144) 4.1 0.005986 0.023328
GO:0016579 protein deubiquitination 1.39% (2/144) 4.1 0.005986 0.023328
GO:0033013 tetrapyrrole metabolic process 1.39% (2/144) 4.17 0.005408 0.023824
GO:0006420 arginyl-tRNA aminoacylation 0.69% (1/144) 7.42 0.005829 0.023948
GO:0006189 'de novo' IMP biosynthetic process 0.69% (1/144) 7.42 0.005829 0.023948
GO:0046040 IMP metabolic process 0.69% (1/144) 7.42 0.005829 0.023948
GO:0004814 arginine-tRNA ligase activity 0.69% (1/144) 7.42 0.005829 0.023948
GO:0006188 IMP biosynthetic process 0.69% (1/144) 7.42 0.005829 0.023948
GO:0140101 catalytic activity, acting on a tRNA 2.08% (3/144) 3.01 0.006235 0.023992
GO:1990904 ribonucleoprotein complex 1.39% (2/144) 4.03 0.00659 0.025044
GO:0009126 purine nucleoside monophosphate metabolic process 0.69% (1/144) 6.42 0.011625 0.038836
GO:0009127 purine nucleoside monophosphate biosynthetic process 0.69% (1/144) 6.42 0.011625 0.038836
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 0.69% (1/144) 6.42 0.011625 0.038836
GO:0009167 purine ribonucleoside monophosphate metabolic process 0.69% (1/144) 6.42 0.011625 0.038836
GO:0009161 ribonucleoside monophosphate metabolic process 0.69% (1/144) 6.42 0.011625 0.038836
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 0.69% (1/144) 6.42 0.011625 0.038836
GO:0004345 glucose-6-phosphate dehydrogenase activity 0.69% (1/144) 6.42 0.011625 0.038836
GO:0004418 hydroxymethylbilane synthase activity 0.69% (1/144) 6.42 0.011625 0.038836
GO:0016423 tRNA (guanine) methyltransferase activity 0.69% (1/144) 6.42 0.011625 0.038836
GO:0009156 ribonucleoside monophosphate biosynthetic process 0.69% (1/144) 6.42 0.011625 0.038836
GO:0044249 cellular biosynthetic process 4.86% (7/144) 1.5 0.012347 0.040359
GO:0005524 ATP binding 6.94% (10/144) 1.2 0.012328 0.040735
GO:0030170 pyridoxal phosphate binding 1.39% (2/144) 3.52 0.013193 0.041346
GO:0070279 vitamin B6 binding 1.39% (2/144) 3.52 0.013193 0.041346
GO:0070647 protein modification by small protein conjugation or removal 1.39% (2/144) 3.52 0.013193 0.041346
GO:0032559 adenyl ribonucleotide binding 6.94% (10/144) 1.19 0.012976 0.041965
GO:0016491 oxidoreductase activity 4.17% (6/144) 1.62 0.013942 0.043249
GO:0009451 RNA modification 1.39% (2/144) 3.62 0.011551 0.043353
GO:0008033 tRNA processing 1.39% (2/144) 3.42 0.014929 0.045843
GO:0004109 coproporphyrinogen oxidase activity 0.69% (1/144) 5.84 0.017387 0.048942
GO:0004363 glutathione synthase activity 0.69% (1/144) 5.84 0.017387 0.048942
GO:0005730 nucleolus 0.69% (1/144) 5.84 0.017387 0.048942
GO:0008175 tRNA methyltransferase activity 0.69% (1/144) 5.84 0.017387 0.048942
GO:0009123 nucleoside monophosphate metabolic process 0.69% (1/144) 5.84 0.017387 0.048942
GO:1904091 non-ribosomal peptide synthetase activity 0.69% (1/144) 5.84 0.017387 0.048942
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 0.69% (1/144) 5.84 0.017387 0.048942
GO:0009124 nucleoside monophosphate biosynthetic process 0.69% (1/144) 5.84 0.017387 0.048942
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Abrodictyum obscurum HCCA Cluster_153 0.019 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_59 0.018 OrthoFinder output from all 47 species Compare
Angiopteris evecta HCCA Cluster_95 0.015 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_6 0.017 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_54 0.022 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_71 0.044 OrthoFinder output from all 47 species Compare
Azolla filiculoides HCCA Cluster_96 0.019 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_99 0.019 OrthoFinder output from all 47 species Compare
Adiantum latifolium HCCA Cluster_113 0.017 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_211 0.015 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_234 0.017 OrthoFinder output from all 47 species Compare
Alsophila latebrosa HCCA Cluster_266 0.017 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_6 0.027 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_281 0.017 OrthoFinder output from all 47 species Compare
Amblovenatum opulentum HCCA Cluster_283 0.026 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_32 0.017 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_54 0.017 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_75 0.016 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_139 0.018 OrthoFinder output from all 47 species Compare
Alsophila spinulosa HCCA Cluster_154 0.018 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_101 0.016 OrthoFinder output from all 47 species Compare
Amborella trichopoda HCCA Cluster_109 0.027 OrthoFinder output from all 47 species Compare
Cibotium barometz HCCA Cluster_8 0.017 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_25 0.017 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_45 0.016 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_48 0.017 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_53 0.083 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_63 0.02 OrthoFinder output from all 47 species Compare
Chlamydomonas reinhardtii HCCA Cluster_81 0.052 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_10 0.017 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_33 0.019 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_142 0.017 OrthoFinder output from all 47 species Compare
Ceratopteris richardii HCCA Cluster_155 0.02 OrthoFinder output from all 47 species Compare
Diplazium proliferum (Lam.) Kaulf. HCCA Cluster_120 0.02 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_38 0.023 OrthoFinder output from all 47 species Compare
Dicranopteris curranii HCCA Cluster_149 0.024 OrthoFinder output from all 47 species Compare
Davallia denticulata HCCA Cluster_169 0.018 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_24 0.018 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_32 0.028 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_35 0.027 OrthoFinder output from all 47 species Compare
Equisetum hyemale HCCA Cluster_71 0.027 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_11 0.029 OrthoFinder output from all 47 species Compare
Ginkgo biloba HCCA Cluster_61 0.02 OrthoFinder output from all 47 species Compare
Lygodium flexuosum HCCA Cluster_47 0.017 OrthoFinder output from all 47 species Compare
Microlepia speluncae HCCA Cluster_105 0.019 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_11 0.025 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_22 0.016 OrthoFinder output from all 47 species Compare
Marchantia polymorpha HCCA Cluster_41 0.073 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_12 0.026 OrthoFinder output from all 47 species Compare
Nephrolepis biserrata HCCA Cluster_153 0.016 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_32 0.026 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_137 0.024 OrthoFinder output from all 47 species Compare
Ophioglossum reticulatum HCCA Cluster_143 0.022 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_58 0.016 OrthoFinder output from all 47 species Compare
Oryza sativa HCCA Cluster_60 0.052 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_188 0.018 OrthoFinder output from all 47 species Compare
Picea abies HCCA Cluster_198 0.033 OrthoFinder output from all 47 species Compare
Pleocnemia irregularis HCCA Cluster_189 0.019 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_107 0.016 OrthoFinder output from all 47 species Compare
Psilotum nudum HCCA Cluster_108 0.016 OrthoFinder output from all 47 species Compare
Physcomitrella patens HCCA Cluster_120 0.026 OrthoFinder output from all 47 species Compare
Salvinia molesta HCCA Cluster_145 0.018 OrthoFinder output from all 47 species Compare
Salvinia cucullata HCCA Cluster_61 0.015 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_8 0.022 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_19 0.074 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_135 0.016 OrthoFinder output from all 47 species Compare
Solanum lycopersicum HCCA Cluster_136 0.017 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_34 0.016 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_42 0.015 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_87 0.025 OrthoFinder output from all 47 species Compare
Selaginella moellendorffii HCCA Cluster_93 0.015 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_47 0.017 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_137 0.022 OrthoFinder output from all 47 species Compare
Stenochlaena palustris HCCA Cluster_185 0.015 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_140 0.021 OrthoFinder output from all 47 species Compare
Tectaria incisa HCCA Cluster_141 0.04 OrthoFinder output from all 47 species Compare
Vitis vinifera HCCA Cluster_30 0.062 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_59 0.039 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_71 0.026 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_93 0.016 OrthoFinder output from all 47 species Compare
Zea mays HCCA Cluster_183 0.021 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_38 0.017 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_65 0.029 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_120 0.017 OrthoFinder output from all 47 species Compare
Arabidopsis thaliana HCCA Cluster_121 0.025 OrthoFinder output from all 47 species Compare
Sequences (144) (download table)

InterPro Domains

GO Terms

Family Terms