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  5. Cpa|evm.model.tig00020553.157

Cpa|evm.model.tig00020553.157


Description : Protein BTR1 OS=Arabidopsis thaliana


Gene families : OG0001047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020553.157
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00235910 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s00099p00056810 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00169p00047130 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AT2G25970 No alias KH domain-containing protein 0.02 OrthoFinder output from all 47 species
Adi_g013154 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g29246 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g32757 No alias virus infection resistance factor *(BTR1) & original... 0.02 OrthoFinder output from all 47 species
Aop_g02902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0004.g008730 No alias not classified & original description: CDS=100-2877 0.01 OrthoFinder output from all 47 species
Ceric.03G027700.1 Ceric.03G027700 not classified & original description: pacid=50573278... 0.01 OrthoFinder output from all 47 species
Cre06.g250800 No alias No description available 0.01 OrthoFinder output from all 47 species
Gb_31122 No alias Protein BTR1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Len_g24459 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g59778 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_10434164g0020 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Nbi_g17013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g02557 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g49685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18992 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000424 No alias not classified & original description: CDS=117-1961 0.01 OrthoFinder output from all 47 species
Solyc12g095960.3.1 Solyc12g095960 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g07318 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 118 182
IPR004088 KH_dom_type_1 228 295
IPR004088 KH_dom_type_1 347 410
No external refs found!