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  5. Cpa|evm.model.tig00001408.15

Cpa|evm.model.tig00001408.15


Description : Vesicle trafficking.Coat protein II (COPII) coatomer machinery.coat protein complex.Sec23/24 cargo adaptor subcomplex.Sec23 component


Gene families : OG0001171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001408.15

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00163370 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.04 OrthoFinder output from all 47 species
AMTR_s00048p00165750 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder output from all 47 species
AT1G05520 No alias Sec23/Sec24 protein transport family protein 0.04 OrthoFinder output from all 47 species
AT3G23660 No alias Sec23/Sec24 protein transport family protein 0.03 OrthoFinder output from all 47 species
Aev_g02536 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.04 OrthoFinder output from all 47 species
Ala_g02545 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Als_g38023 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Aob_g05331 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Aop_g02924 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Aop_g15702 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Aspi01Gene59707.t1 Aspi01Gene59707 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0118.g046613 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.03 OrthoFinder output from all 47 species
Cba_g16653 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.03 OrthoFinder output from all 47 species
Cba_g18092 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Ceric.01G119200.1 Ceric.01G119200 component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.07 OrthoFinder output from all 47 species
Ceric.08G068800.1 Ceric.08G068800 component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Ceric.37G050300.1 Ceric.37G050300 component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Cre03.g180850 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Dac_g02356 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Dac_g06552 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Dcu_g08265 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Dcu_g08281 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Dde_g02954 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Dde_g23361 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
GSVIVT01018103001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
GSVIVT01026719001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.05 OrthoFinder output from all 47 species
GSVIVT01031567001 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Gb_05558 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 OrthoFinder output from all 47 species
LOC_Os03g53140.2 LOC_Os03g53140 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
LOC_Os08g36994.1 LOC_Os08g36994 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
LOC_Os11g24560.1 LOC_Os11g24560 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 OrthoFinder output from all 47 species
Lfl_g02282 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Mp7g12190.1 No alias component Sec23 of Sec23/24 cargo adaptor subcomplex 0.05 OrthoFinder output from all 47 species
Nbi_g07000 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Ore_g15381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25550 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.06 OrthoFinder output from all 47 species
Pir_g10398 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Pir_g49407 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Ppi_g04623 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Ppi_g17399 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011867 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.01 OrthoFinder output from all 47 species
Sam_g08427 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Sam_g17755 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Smo107900 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.02 OrthoFinder output from all 47 species
Smo168140 No alias Vesicle trafficking.Coat protein II (COPII) coatomer... 0.01 OrthoFinder output from all 47 species
Solyc01g081070.3.1 Solyc01g081070 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.01 OrthoFinder output from all 47 species
Solyc03g005380.3.1 Solyc03g005380 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.01 OrthoFinder output from all 47 species
Spa_g17950 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Spa_g53620 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex... 0.02 OrthoFinder output from all 47 species
Zm00001e008888_P001 Zm00001e008888 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.04 OrthoFinder output from all 47 species
Zm00001e009959_P002 Zm00001e009959 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.02 OrthoFinder output from all 47 species
Zm00001e012060_P001 Zm00001e012060 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.01 OrthoFinder output from all 47 species
Zm00001e021415_P001 Zm00001e021415 component Sec23 of Sec23/24 cargo adaptor subcomplex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEA Interproscan
CC GO:0030127 COPII vesicle coat IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR006895 Znf_Sec23_Sec24 164 203
IPR012990 Sec23_24_beta_S 508 609
IPR006900 Sec23/24_helical_dom 622 700
No external refs found!