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  5. Cpa|evm.model.tig00001073.20

Cpa|evm.model.tig00001073.20 (NOP56)


Aliases : NOP56

Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop56 snoRNP scaffold component


Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001073.20
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00226680 NOP56,... RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.07 OrthoFinder output from all 47 species
AT3G12860 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 OrthoFinder output from all 47 species
Adi_g050304 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Aop_g11428 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Aspi01Gene21353.t2 Aspi01Gene21353 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene21355.t1 NOP56, Aspi01Gene21355 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene34301.t1 NOP56, Aspi01Gene34301 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Azfi_s0061.g034932 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Cba_g57048 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.01 OrthoFinder output from all 47 species
Cba_g77651 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.01 OrthoFinder output from all 47 species
Cre12.g525200 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder output from all 47 species
Dac_g14259 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Dde_g24737 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Ehy_g06884 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
GSVIVT01008506001 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.07 OrthoFinder output from all 47 species
Gb_05243 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species
LOC_Os03g22880.1 NOP56, LOC_Os03g22880 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.02 OrthoFinder output from all 47 species
Len_g11157 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Lfl_g03084 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
MA_10395559g0010 No alias Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_9961528g0010 NOP56 Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp2g23840.1 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.08 OrthoFinder output from all 47 species
Nbi_g26532 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Pir_g04791 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.01 OrthoFinder output from all 47 species
Pp3c16_5220V3.1 NOP56, Pp3c16_5220 homolog of nucleolar protein NOP56 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017374 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Sam_g10672 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Sam_g49941 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.01 OrthoFinder output from all 47 species
Smo167367 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.05 OrthoFinder output from all 47 species
Solyc01g100570.4.1 NOP56, Solyc01g100570 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.05 OrthoFinder output from all 47 species
Spa_g48006 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.01 OrthoFinder output from all 47 species
Tin_g03400 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Zm00001e001676_P001 NOP56, Zm00001e001676 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species
Zm00001e038196_P002 NOP56, Zm00001e038196 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 4 69
IPR002687 Nop_dom 177 410
No external refs found!