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  5. Cpa|evm.model.tig00000553.10

Cpa|evm.model.tig00000553.10 (CBF5, AtCBF5, NAP57, AtNAP57)


Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : RNA processing.RNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex.Nap57/CBF5 pseudouridine synthase component


Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000553.10
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00253700 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.01 OrthoFinder output from all 47 species
AT3G57150 CBF5, AtCBF5,... homologue of NAP57 0.04 OrthoFinder output from all 47 species
Als_g01903 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.02 OrthoFinder output from all 47 species
Aob_g39486 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Aop_g04269 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.02 OrthoFinder output from all 47 species
Azfi_s0132.g049274 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.06 OrthoFinder output from all 47 species
Ceric.36G038600.1 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.01 OrthoFinder output from all 47 species
Cre03.g172950 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.15 OrthoFinder output from all 47 species
Dac_g22680 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Dcu_g11724 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Dde_g48852 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.02 OrthoFinder output from all 47 species
Ehy_g09120 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.04 OrthoFinder output from all 47 species
GSVIVT01034188001 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.05 OrthoFinder output from all 47 species
Gb_32372 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 OrthoFinder output from all 47 species
Gb_34541 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.04 OrthoFinder output from all 47 species
Lfl_g10584 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
MA_27456g0030 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.05 OrthoFinder output from all 47 species
Mp4g12650.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.09 OrthoFinder output from all 47 species
Ppi_g35999 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.01 OrthoFinder output from all 47 species
Sam_g17675 No alias pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.01 OrthoFinder output from all 47 species
Smo81986 CBF5, AtCBF5,... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 OrthoFinder output from all 47 species
Solyc02g081810.4.1 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.06 OrthoFinder output from all 47 species
Spa_g05917 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Tin_g32083 CBF5, AtCBF5,... pseudouridine synthase component *(Nap57/CBF5) of H/ACA... 0.03 OrthoFinder output from all 47 species
Zm00001e017259_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.02 OrthoFinder output from all 47 species
Zm00001e025570_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.02 OrthoFinder output from all 47 species
Zm00001e035655_P001 CBF5, AtCBF5,... pseudouridine synthase component Nap57/CBF5 of H/ACA... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012960 Dyskerin-like 43 100
IPR032819 TruB_C 221 287
IPR002478 PUA 291 364
IPR002501 PsdUridine_synth_N 104 220
No external refs found!