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  5. Cpa|evm.model.tig00000545.36

Cpa|evm.model.tig00000545.36


No description available


Gene families : OG0004660 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004660_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000545.36
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00137580 evm_27.TU.AmTr_v1... No description available 0.01 OrthoFinder output from all 47 species
AMTR_s00049p00137690 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT1G13160 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g053627 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07971 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g22171 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g60006 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.37G033500.1 Ceric.37G033500 not classified & original description: pacid=50616272... 0.01 OrthoFinder output from all 47 species
Cre06.g277050 No alias No description available 0.12 OrthoFinder output from all 47 species
Dcu_g12020 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01000585001 No alias No description available 0.11 OrthoFinder output from all 47 species
Gb_20290 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os04g53770.1 LOC_Os04g53770 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Len_g13280 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_1537g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_29597g0020 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_5190203g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp5g17670.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0041.g012514 No alias not classified & original description: CDS=1-2394 0.03 OrthoFinder output from all 47 species
Smo113277 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc12g099890.2.1 Solyc12g099890 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Spa_g06214 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006853_P001 Zm00001e006853 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0030490 maturation of SSU-rRNA IEP HCCA
MF GO:0030515 snoRNA binding IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR012977 SDA1_N 54 105
IPR007949 SDA1_C 406 735
No external refs found!