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  5. Cpa|evm.model.tig00000404.31

Cpa|evm.model.tig00000404.31


No description available


Gene families : OG0000880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000404.31
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00244720 evm_27.TU.AmTr_v1... RGG repeats nuclear RNA binding protein A (Fragment)... 0.02 OrthoFinder output from all 47 species
AMTR_s00056p00215280 evm_27.TU.AmTr_v1... RGG repeats nuclear RNA binding protein A (Fragment)... 0.02 OrthoFinder output from all 47 species
Adi_g025028 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Adi_g054126 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g117739 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Aev_g07778 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Als_g49238 No alias regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
Aob_g01753 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Aob_g20955 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g30074 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene05324.t1 Aspi01Gene05324 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene06889.t1 Aspi01Gene06889 regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010039 No alias regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Azfi_s0208.g057973 No alias regulatory protein *(RGG) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
Cba_g17505 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ceric.01G019400.1 Ceric.01G019400 regulatory protein *(RGG) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Ceric.19G044700.1 Ceric.19G044700 regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
Ceric.19G044900.1 Ceric.19G044900 regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Ceric.30G035000.1 Ceric.30G035000 regulatory protein *(RGG) of mRNA quality control &... 0.05 OrthoFinder output from all 47 species
Dcu_g06916 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Ehy_g04740 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01002125001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_32212 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g09707 No alias regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
Len_g12236 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13836 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Lfl_g25358 No alias regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
Lfl_g26170 No alias regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
MA_9567870g0010 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.04 OrthoFinder output from all 47 species
Mp4g03030.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp4g04410.1 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Msp_g10018 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Nbi_g09170 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Nbi_g22306 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g04627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08261 No alias regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
Pir_g42234 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g18238 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g20153 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Sam_g26127 No alias regulatory protein *(RGG) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Spa_g18779 No alias regulatory protein *(RGG) of mRNA quality control &... 0.01 OrthoFinder output from all 47 species
Spa_g31252 No alias regulatory protein *(RGG) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
Spa_g50119 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g05938 No alias regulatory protein *(RGG) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Tin_g27274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004664 prephenate dehydratase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006558 L-phenylalanine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0009094 L-phenylalanine biosynthetic process IEP HCCA
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP HCCA
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 128 232
No external refs found!