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  5. Cpa|evm.model.tig00000076.67

Cpa|evm.model.tig00000076.67 (CYCA1;1)


Aliases : CYCA1;1

Description : Cyclin-A2-1 OS=Oryza sativa subsp. japonica


Gene families : OG0001097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000076.67
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272790 CYCA3;1,... Cell cycle.regulation.cyclins.CYCA-type cyclin 0.04 OrthoFinder output from all 47 species
AMTR_s00068p00198800 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.04 OrthoFinder output from all 47 species
AT1G15570 CYCA2;3 CYCLIN A2;3 0.02 OrthoFinder output from all 47 species
AT1G44110 CYCA1;1 Cyclin A1;1 0.06 OrthoFinder output from all 47 species
AT1G47210 CYCA3;2 cyclin-dependent protein kinase 3;2 0.02 OrthoFinder output from all 47 species
AT1G80370 CYCA2;4 Cyclin A2;4 0.02 OrthoFinder output from all 47 species
AT5G43080 CYCA3;1 Cyclin A3;1 0.05 OrthoFinder output from all 47 species
Adi_g023459 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Adi_g039314 CYCA2;1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g16144 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Ala_g21059 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Ala_g23638 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ala_g25625 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Als_g03751 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Als_g14283 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Aob_g29454 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Aop_g01772 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Aop_g04287 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Aop_g19060 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Aspi01Gene15105.t1 CYCA1;1, Aspi01Gene15105 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Aspi01Gene18499.t1 CYCA1;1, Aspi01Gene18499 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008079 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g010440 CYCA1;1 not classified & original description: CDS=585-2150 0.03 OrthoFinder output from all 47 species
Azfi_s0051.g031411 CYCA1;1 not classified & original description: CDS=319-1644 0.02 OrthoFinder output from all 47 species
Azfi_s0127.g048725 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Cba_g05904 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Cba_g13278 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.01 OrthoFinder output from all 47 species
Ceric.08G046900.1 CYCA1;1, Ceric.08G046900 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ceric.26G030100.1 CYCA1;1, Ceric.26G030100 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Ceric.30G011000.1 CYCA1;1, Ceric.30G011000 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Ceric.33G050700.1 CYCA1;1, Ceric.33G050700 regulatory protein *(TAM) involved in metaphase to... 0.09 OrthoFinder output from all 47 species
Dac_g04219 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Dac_g11514 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Dac_g13212 CYCA1;1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g04793 CYC3B, CYCA2;2, CYC2BAT regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Dcu_g31687 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Dde_g11191 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
GSVIVT01008823001 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 OrthoFinder output from all 47 species
GSVIVT01009399001 CYCA3;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.05 OrthoFinder output from all 47 species
GSVIVT01035718001 CYC3B, CYCA2;2, CYC2BAT Cell cycle.regulation.cyclins.CYCA-type cyclin 0.04 OrthoFinder output from all 47 species
Gb_03779 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.07 OrthoFinder output from all 47 species
Gb_07594 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.08 OrthoFinder output from all 47 species
Gb_10619 CYCA1;1 cyclin (CYCA) 0.05 OrthoFinder output from all 47 species
LOC_Os01g13260.1 CYCA1;1, LOC_Os01g13260 cyclin (CYCA) 0.01 OrthoFinder output from all 47 species
LOC_Os03g41100.1 CYCA3;1, LOC_Os03g41100 cyclin (CYCA) 0.06 OrthoFinder output from all 47 species
LOC_Os12g31810.1 CYCA2;4, LOC_Os12g31810 cyclin (CYCA) 0.04 OrthoFinder output from all 47 species
LOC_Os12g39210.1 CYCA3;4, LOC_Os12g39210 cyclin (CYCA) 0.04 OrthoFinder output from all 47 species
Len_g04784 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Len_g08312 CYC3B, CYCA2;2, CYC2BAT regulatory protein *(CYCA) of cell cycle & original... 0.05 OrthoFinder output from all 47 species
Len_g21318 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Lfl_g27348 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
Lfl_g27435 CYCA1;1 regulatory protein *(CYCA) of cell cycle & original... 0.02 OrthoFinder output from all 47 species
Lfl_g39997 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.03 OrthoFinder output from all 47 species
MA_103138g0010 CYCA1;1 cyclin (CYCA) 0.04 OrthoFinder output from all 47 species
MA_28323g0010 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.08 OrthoFinder output from all 47 species
MA_6619g0010 CYCA1;1 cyclin (CYCA) 0.07 OrthoFinder output from all 47 species
MA_88982g0010 CYC3B, CYCA2;2, CYC2BAT cyclin (CYCA) 0.08 OrthoFinder output from all 47 species
Mp2g25500.1 CYCA1;1 cyclin (CYCA) 0.08 OrthoFinder output from all 47 species
Msp_g10135 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Msp_g12560 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Msp_g31552 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.05 OrthoFinder output from all 47 species
Nbi_g06697 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Nbi_g16546 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Nbi_g24493 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.07 OrthoFinder output from all 47 species
Ppi_g05200 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.02 OrthoFinder output from all 47 species
Ppi_g07555 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.01 OrthoFinder output from all 47 species
Ppi_g31211 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010609 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Sam_g12488 No alias regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Sam_g12489 No alias regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Sam_g28585 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51377 No alias regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Smo442428 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 OrthoFinder output from all 47 species
Smo97411 CYCA1;1 Cell cycle.regulation.cyclins.CYCA-type cyclin 0.03 OrthoFinder output from all 47 species
Solyc06g065680.3.1 CYCA2;4, Solyc06g065680 cyclin (CYCA) 0.02 OrthoFinder output from all 47 species
Solyc11g005090.2.1 CYCA1;1, Solyc11g005090 cyclin (CYCA) 0.02 OrthoFinder output from all 47 species
Solyc12g088470.3.1 CYCA3;1, Solyc12g088470 cyclin (CYCA) 0.06 OrthoFinder output from all 47 species
Solyc12g088500.2.1 CYCA3;1, Solyc12g088500 cyclin (CYCA) 0.04 OrthoFinder output from all 47 species
Solyc12g088520.2.1 CYCA3;1, Solyc12g088520 cyclin (CYCA) 0.03 OrthoFinder output from all 47 species
Spa_g11240 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Spa_g11241 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.08 OrthoFinder output from all 47 species
Spa_g11267 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.04 OrthoFinder output from all 47 species
Spa_g30899 CYCA1;1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g03369 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Tin_g30126 CYCA1;1 regulatory protein *(TAM) involved in metaphase to... 0.06 OrthoFinder output from all 47 species
Zm00001e003049_P002 CYCA3;1, Zm00001e003049 cyclin (CYCA) 0.01 OrthoFinder output from all 47 species
Zm00001e005138_P001 CYCA3;1, Zm00001e005138 cyclin (CYCA) 0.03 OrthoFinder output from all 47 species
Zm00001e017335_P001 CYCA1;1, Zm00001e017335 cyclin (CYCA) 0.03 OrthoFinder output from all 47 species
Zm00001e026125_P002 CYCA1;1, Zm00001e026125 cyclin (CYCA) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP HCCA
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000776 kinetochore IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0031144 proteasome localization IEP HCCA
CC GO:0031262 Ndc80 complex IEP HCCA
BP GO:0031503 protein-containing complex localization IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004367 Cyclin_C-dom 200 313
IPR006671 Cyclin_N 139 196
No external refs found!