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  5. Pnu_g33035

Pnu_g33035 (LHCB4.1)


Aliases : LHCB4.1

Description : component *(LHCb4) of LHC-II complex & original description: none


Gene families : OG0003968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g33035
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00239610 LHCB4.2,... Photosynthesis.photophosphorylation.photosystem... 0.1 OrthoFinder output from all 47 species
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.07 OrthoFinder output from all 47 species
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.11 OrthoFinder output from all 47 species
Adi_g047687 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Adi_g079332 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g13668 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g11240 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Als_g08280 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Aob_g39718 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Aop_g05395 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Aop_g05396 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.1 OrthoFinder output from all 47 species
Azfi_s0173.g055756 LHCB4.2 component *(LHCb4) of LHC-II complex & original... 0.07 OrthoFinder output from all 47 species
Cba_g11090 No alias component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g34516 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.05G075200.1 LHCB4.2, Ceric.05G075200 component *(LHCb4) of LHC-II complex & original... 0.1 OrthoFinder output from all 47 species
Ceric.22G069400.1 LHCB4.1, Ceric.22G069400 component *(LHCb4) of LHC-II complex & original... 0.11 OrthoFinder output from all 47 species
Cre17.g720250 LHCB4.3 Photosynthesis.photophosphorylation.photosystem... 0.08 OrthoFinder output from all 47 species
Dac_g23809 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g45560 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g49585 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Dde_g10605 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g03348 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Gb_13368 LHCB4.3 component LHCb4 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Gb_38595 LHCB4.1 component LHCb4 of LHC-II complex 0.07 OrthoFinder output from all 47 species
LOC_Os07g37240.1 LHCB4.1, LOC_Os07g37240 component LHCb4 of LHC-II complex 0.09 OrthoFinder output from all 47 species
Len_g31128 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Len_g34078 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
MA_129206g0010 LHCB4.2 component LHCb4 of LHC-II complex 0.08 OrthoFinder output from all 47 species
Mp1g16850.1 LHCB4.1 component LHCb4 of LHC-II complex 0.12 OrthoFinder output from all 47 species
Msp_g07941 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.12 OrthoFinder output from all 47 species
Nbi_g01855 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.14 OrthoFinder output from all 47 species
Pir_g15460 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Pp3c12_25460V3.1 LHCB4.1, Pp3c12_25460 light harvesting complex photosystem II 0.02 OrthoFinder output from all 47 species
Ppi_g08836 LHCB4.3 component *(LHCb4) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15010 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016319 LHCB4.1 component *(LHCb4) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Smo149722 LHCB4.2 Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
Solyc09g014520.3.1 LHCB4.1, Solyc09g014520 component LHCb4 of LHC-II complex 0.09 OrthoFinder output from all 47 species
Spa_g08357 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g50929 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g50931 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g08576 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e010547_P001 LHCB4.1, Zm00001e010547 component LHCb4 of LHC-II complex 0.07 OrthoFinder output from all 47 species
Zm00001e035235_P001 LHCB4.1, Zm00001e035235 component LHCb4 of LHC-II complex 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006536 glutamate metabolic process IEP HCCA
BP GO:0006537 glutamate biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0043650 dicarboxylic acid biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 77 273
No external refs found!