ATCG00680 (PSBB)

Aliases : PSBB

Description : photosystem II reaction center protein B

Gene families : OG0004191 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004191_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ATCG00680
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00585p00000100	PSBB,...	Photosynthesis.photophosphorylation.photosystem II.PS-II...	0.14	OrthoFinder output from all 47 species
Adi_g005798	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.02	OrthoFinder output from all 47 species
Aev_g08305	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.33	OrthoFinder output from all 47 species
Als_g00826	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.11	OrthoFinder output from all 47 species
Aob_g02288	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.19	OrthoFinder output from all 47 species
Cba_g02603	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.1	OrthoFinder output from all 47 species
Ceric.02G013400.1	PSBB, Ceric.02G013400	component *(PsbB/CP47) of PS-II reaction center complex...	0.07	OrthoFinder output from all 47 species
Ceric.02G015500.1	PSBB, Ceric.02G015500	component *(PsbB/CP47) of PS-II reaction center complex...	0.08	OrthoFinder output from all 47 species
Ceric.05G041400.1	PSBB, Ceric.05G041400	component *(PsbB/CP47) of PS-II reaction center complex...	0.33	OrthoFinder output from all 47 species
Ceric.05G051100.1	PSBB, Ceric.05G051100	component *(PsbB/CP47) of PS-II reaction center complex...	0.23	OrthoFinder output from all 47 species
Ceric.14G009600.1	PSBB, Ceric.14G009600	not classified & original description: pacid=50634641...	0.08	OrthoFinder output from all 47 species
Ceric.19G038500.1	PSBB, Ceric.19G038500	not classified & original description: pacid=50576616...	0.06	OrthoFinder output from all 47 species
Ceric.1Z019400.1	PSBB, Ceric.1Z019400	component *(PsbB/CP47) of PS-II reaction center complex...	0.15	OrthoFinder output from all 47 species
Ceric.1Z021200.1	PSBB, Ceric.1Z021200	component *(PsbB/CP47) of PS-II reaction center complex...	0.11	OrthoFinder output from all 47 species
Ceric.1Z162800.1	PSBB, Ceric.1Z162800	component *(PsbB/CP47) of PS-II reaction center complex...	0.24	OrthoFinder output from all 47 species
Ceric.30G038800.1	PSBB, Ceric.30G038800	not classified & original description: pacid=50609266...	0.11	OrthoFinder output from all 47 species
Ceric.38G008000.1	PSBB, Ceric.38G008000	component *(PsbB/CP47) of PS-II reaction center complex...	0.33	OrthoFinder output from all 47 species
Dac_g09466	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
Dcu_g21021	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.12	OrthoFinder output from all 47 species
Dde_g03407	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.03	OrthoFinder output from all 47 species
GSVIVT01006503001	PSBB	Photosystem II CP47 reaction center protein OS=Phaseolus vulgaris	0.09	OrthoFinder output from all 47 species
GSVIVT01028641001	No alias	Photosystem II CP47 reaction center protein...	0.01	OrthoFinder output from all 47 species
Gb_23567	PSBB	component PsbB/CP47 of PS-II reaction center complex	0.17	OrthoFinder output from all 47 species
Gb_27294	PSBB	Photosystem II CP47 reaction center protein OS=Cycas...	0.17	OrthoFinder output from all 47 species
LOC_Os06g39708.1	PSBB, LOC_Os06g39708	component PsbB/CP47 of PS-II reaction center complex	0.47	OrthoFinder output from all 47 species
LOC_Os09g04680.1	PSBB, LOC_Os09g04680	Photosystem II CP47 reaction center protein OS=Oryza...	0.38	OrthoFinder output from all 47 species
LOC_Os10g21310.1	PSBB, LOC_Os10g21310	component PsbB/CP47 of PS-II reaction center complex	0.43	OrthoFinder output from all 47 species
LOC_Os12g10600.1	PSBB, LOC_Os12g10600	Photosystem II CP47 reaction center protein OS=Oryza...	0.06	OrthoFinder output from all 47 species
Len_g02818	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.04	OrthoFinder output from all 47 species
Lfl_g04892	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.21	OrthoFinder output from all 47 species
Mpzg01020.1	PSBB	component PsbB/CP47 of PS-II reaction center complex	0.08	OrthoFinder output from all 47 species
Msp_g21439	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.02	OrthoFinder output from all 47 species
Ore_g02100	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.2	OrthoFinder output from all 47 species
Pir_g05119	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.16	OrthoFinder output from all 47 species
Pnu_g00696	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.04	OrthoFinder output from all 47 species
Pp3c21_5650V3.1	PETB, Pp3c21_5650	photosynthetic electron transfer B	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002254	PSBB	not classified & original description: CDS=1-408	0.18	OrthoFinder output from all 47 species
Sam_g10281	No alias	component *(PsbB/CP47) of PS-II reaction center complex...	0.09	OrthoFinder output from all 47 species
Smo137729	PSBB	Photosystem II CP47 reaction center protein OS=Angiopteris evecta	0.21	OrthoFinder output from all 47 species
Solyc00g500024.1.1	PSBB, Solyc00g500024	component PsbB/CP47 of PS-II reaction center complex	0.36	OrthoFinder output from all 47 species
Solyc00g500071.1.1	PSBB, Solyc00g500071	component PsbB/CP47 of PS-II reaction center complex	0.36	OrthoFinder output from all 47 species
Spa_g04296	PSBB	component *(PsbB/CP47) of PS-II reaction center complex...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006354	DNA-templated transcription elongation	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009539	photosystem II reaction center	TAS	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010207	photosystem II assembly	IMP	Interproscan
BP	GO:0010207	photosystem II assembly	RCA	Interproscan
CC	GO:0010287	plastoglobule	IDA	Interproscan
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016168	chlorophyll binding	TAS	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0019684	photosynthesis, light reaction	TAS	Interproscan
CC	GO:0019867	outer membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000311	plastid large ribosomal subunit	IEP	HCCA
CC	GO:0000315	organellar large ribosomal subunit	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003959	NADPH dehydrogenase activity	IEP	HCCA
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006175	dATP biosynthetic process	IEP	HCCA
BP	GO:0006176	dATP biosynthetic process from ADP	IEP	HCCA
BP	GO:0006733	obsolete oxidoreduction coenzyme metabolic process	IEP	HCCA
BP	GO:0006743	ubiquinone metabolic process	IEP	HCCA
BP	GO:0006744	ubiquinone biosynthetic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009106	lipoate metabolic process	IEP	HCCA
BP	GO:0009108	obsolete coenzyme biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009151	purine deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009153	purine deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009200	deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009202	deoxyribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009215	purine deoxyribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009216	purine deoxyribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	HCCA
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009265	2'-deoxyribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	HCCA
CC	GO:0009512	cytochrome b6f complex	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
CC	GO:0009533	chloroplast stromal thylakoid	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009544	chloroplast ATP synthase complex	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009767	photosynthetic electron transport chain	IEP	HCCA
BP	GO:0009768	photosynthesis, light harvesting in photosystem I	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
BP	GO:0009773	photosynthetic electron transport in photosystem I	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0015977	carbon fixation	IEP	HCCA
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	HCCA
BP	GO:0017014	protein nitrosylation	IEP	HCCA
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IEP	HCCA
BP	GO:0018198	peptidyl-cysteine modification	IEP	HCCA
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0022900	electron transport chain	IEP	HCCA
CC	GO:0030095	chloroplast photosystem II	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0042181	ketone biosynthetic process	IEP	HCCA
BP	GO:0042776	proton motive force-driven mitochondrial ATP synthesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
MF	GO:0045158	electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity	IEP	HCCA
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	HCCA
BP	GO:0045333	cellular respiration	IEP	HCCA
BP	GO:0046060	dATP metabolic process	IEP	HCCA
BP	GO:0046385	deoxyribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0048564	photosystem I assembly	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901661	quinone metabolic process	IEP	HCCA
BP	GO:1901663	quinone biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	1	500

External Links

No external refs found!

ATCG00680 (PSBB)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation