AT5G67100 (ICU2)


Aliases : ICU2

Description : DNA-directed DNA polymerases


Gene families : OG0005633 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005633_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G67100
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00221560 ICU2,... RNA biosynthesis.transcriptional activation.GRF-GIF... 0.16 OrthoFinder output from all 47 species
Adi_g018487 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.03 OrthoFinder output from all 47 species
Als_g33916 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.11 OrthoFinder output from all 47 species
Aspi01Gene70874.t1 ICU2, Aspi01Gene70874 catalytic component *(POLA1) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Azfi_s0226.g059002 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.1 OrthoFinder output from all 47 species
Ceric.09G047200.1 ICU2, Ceric.09G047200 catalytic component *(POLA1) of DNA polymerase alpha... 0.19 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000237.42 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.06 OrthoFinder output from all 47 species
Cre04.g214350 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.11 OrthoFinder output from all 47 species
Dac_g30890 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Dcu_g12848 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.12 OrthoFinder output from all 47 species
GSVIVT01022113001 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.17 OrthoFinder output from all 47 species
Gb_26053 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.16 OrthoFinder output from all 47 species
Gb_26055 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.17 OrthoFinder output from all 47 species
LOC_Os01g64820.1 ICU2, LOC_Os01g64820 catalytic component POLA1 of DNA polymerase alpha complex 0.13 OrthoFinder output from all 47 species
Len_g55945 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.1 OrthoFinder output from all 47 species
MA_10427959g0010 ICU2 DNA polymerase alpha catalytic subunit OS=Arabidopsis... 0.15 OrthoFinder output from all 47 species
MA_242082g0010 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.18 OrthoFinder output from all 47 species
MA_3471g0020 ICU2 DNA polymerase alpha catalytic subunit OS=Oryza sativa... 0.21 OrthoFinder output from all 47 species
Mp7g03960.1 ICU2 catalytic component POLA1 of DNA polymerase alpha complex 0.13 OrthoFinder output from all 47 species
Msp_g14735 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.07 OrthoFinder output from all 47 species
Nbi_g01498 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.1 OrthoFinder output from all 47 species
Ppi_g18918 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.02 OrthoFinder output from all 47 species
Sam_g08423 No alias catalytic component *(POLA1) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Smo232193 ICU2 Cell cycle.interphase.DNA replication.elongation.DNA... 0.06 OrthoFinder output from all 47 species
Solyc02g093300.3.1 ICU2, Solyc02g093300 catalytic component POLA1 of DNA polymerase alpha complex 0.14 OrthoFinder output from all 47 species
Spa_g09409 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.06 OrthoFinder output from all 47 species
Tin_g01298 ICU2 catalytic component *(POLA1) of DNA polymerase alpha... 0.1 OrthoFinder output from all 47 species
Zm00001e019156_P001 ICU2, Zm00001e019156 catalytic component POLA1 of DNA polymerase alpha complex 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000076 DNA replication checkpoint signaling IBA Interproscan
BP GO:0000278 mitotic cell cycle RCA Interproscan
BP GO:0000724 double-strand break repair via homologous recombination RCA Interproscan
BP GO:0000731 DNA synthesis involved in DNA repair IBA Interproscan
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
BP GO:0003002 regionalization RCA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity ISS Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity IBA Interproscan
MF GO:0003887 DNA-directed DNA polymerase activity TAS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005658 alpha DNA polymerase:primase complex IBA Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006261 DNA-templated DNA replication RCA Interproscan
BP GO:0006269 DNA replication, synthesis of RNA primer IBA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006271 DNA strand elongation involved in DNA replication IBA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0007155 cell adhesion RCA Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
BP GO:0009910 negative regulation of flower development NAS Interproscan
BP GO:0009965 leaf morphogenesis IMP Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010090 trichome morphogenesis RCA Interproscan
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle RCA Interproscan
BP GO:0033043 regulation of organelle organization RCA Interproscan
BP GO:0042023 DNA endoreduplication RCA Interproscan
BP GO:0045010 actin nucleation RCA Interproscan
BP GO:0048449 floral organ formation RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000281 mitotic cytokinesis IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004529 exodeoxyribonuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005657 replication fork IEP HCCA
CC GO:0005971 ribonucleoside-diphosphate reductase complex IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006287 base-excision repair, gap-filling IEP HCCA
BP GO:0006297 nucleotide-excision repair, DNA gap filling IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006349 regulation of gene expression by genomic imprinting IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007000 nucleolus organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008296 3'-5'-exodeoxyribonuclease activity IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
CC GO:0008622 epsilon DNA polymerase complex IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009200 deoxyribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009202 deoxyribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009292 horizontal gene transfer IEP HCCA
BP GO:0009294 DNA-mediated transformation IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010069 zygote asymmetric cytokinesis in embryo sac IEP HCCA
BP GO:0010070 zygote asymmetric cell division IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
BP GO:0010086 embryonic root morphogenesis IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010216 maintenance of DNA methylation IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032776 DNA methylation on cytosine IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0043137 DNA replication, removal of RNA primer IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045004 DNA replication proofreading IEP HCCA
BP GO:0045005 DNA-templated DNA replication maintenance of fidelity IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048314 embryo sac morphogenesis IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0061640 cytoskeleton-dependent cytokinesis IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
BP GO:2000028 regulation of photoperiodism, flowering IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 817 1278
IPR006133 DNA-dir_DNA_pol_B_exonuc 374 750
IPR015088 Znf_DNA-dir_DNA_pol_B_alpha 1317 1522
IPR024647 DNA_pol_a_cat_su_N 26 97
No external refs found!