AT5G58050 (SVL4)

Aliases : SVL4

Description : SHV3-like 4

Gene families : OG0002387 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G58050
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00055p00174750	GPDL2, SHV3,...	Glycerophosphodiester phosphodiesterase GDPDL3...	0.03	OrthoFinder output from all 47 species
AMTR_s00252p00015420	SVL4,...	Glycerophosphodiester phosphodiesterase GDPDL6...	0.15	OrthoFinder output from all 47 species
AT4G26690	GPDL2, SHV3, MRH5	PLC-like phosphodiesterase family protein	0.06	OrthoFinder output from all 47 species
Adi_g059201	SVL5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g15087	GPDL2, SHV3, MRH5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.08G056600.1	SVL5, Ceric.08G056600	not classified & original description: pacid=50637619...	0.05	OrthoFinder output from all 47 species
Dde_g07994	SVL4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01003731001	SVL5	Glycerophosphodiester phosphodiesterase GDPDL6...	0.1	OrthoFinder output from all 47 species
Gb_10598	SVL1	Glycerophosphodiester phosphodiesterase GDPDL4...	0.05	OrthoFinder output from all 47 species
LOC_Os02g09450.1	SVL5, LOC_Os02g09450	Glycerophosphodiester phosphodiesterase GDPDL7...	0.08	OrthoFinder output from all 47 species
Lfl_g20356	SVL2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10434415g0020	SNC4	Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4...	0.04	OrthoFinder output from all 47 species
Mp8g07940.1	SVL5	Glycerophosphodiester phosphodiesterase GDPDL7...	0.05	OrthoFinder output from all 47 species
Msp_g26126	SVL5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g05893	SVL5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021443	SVL5	not classified & original description: CDS=22-1383	0.03	OrthoFinder output from all 47 species
Solyc02g014490.4.1	SVL4, Solyc02g014490	Glycerophosphodiester phosphodiesterase GDPDL7...	0.17	OrthoFinder output from all 47 species
Solyc02g014530.4.1	SVL4, Solyc02g014530	Glycerophosphodiester phosphodiesterase GDPDL6...	0.12	OrthoFinder output from all 47 species
Solyc07g065120.3.1	SVL1, Solyc07g065120	Glycerophosphodiester phosphodiesterase GDPDL4...	0.04	OrthoFinder output from all 47 species
Spa_g21490	SVL5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e014970_P001	GPDL2, SHV3,...	Glycerophosphodiester phosphodiesterase GDPDL3...	0.03	OrthoFinder output from all 47 species
Zm00001e025069_P001	SVL5, Zm00001e025069	Glycerophosphodiester phosphodiesterase GDPDL7...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006071	glycerol metabolic process	ISS	Interproscan
MF	GO:0008081	phosphoric diester hydrolase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016301	kinase activity	ISS	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019400	alditol metabolic process	None	Extended
BP	GO:0019751	polyol metabolic process	None	Extended
CC	GO:0031225	obsolete anchored component of membrane	TAS	Interproscan
MF	GO:0042578	phosphoric ester hydrolase activity	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005199	structural constituent of cell wall	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009826	unidimensional cell growth	IEP	HCCA
BP	GO:0009827	plant-type cell wall modification	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009860	pollen tube growth	IEP	HCCA
BP	GO:0009932	cell tip growth	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR030395	GP_PDE_dom	360	649
IPR030395	GP_PDE_dom	77	332

External Links

No external refs found!

AT5G58050 (SVL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation