AT5G56860 (GNC, GATA21)


Aliases : GNC, GATA21

Description : GATA type zinc finger transcription factor family protein


Gene families : OG0000100 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000100_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G56860

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00064p00107710 GATA22, CGA1,... RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
Adi_g010084 GATA22, CGA1, GNL not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022369 GATA4 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32134 GATA5 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g34018 GATA12 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os09g08150.1 LOC_Os09g08150 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os12g42970.1 GATA4, LOC_Os12g42970 transcription factor (GATA) 0.02 OrthoFinder output from all 47 species
Lfl_g12909 GATA5 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g27263 GATA17 transcription factor *(A/B-GATA) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02879 GATA15 transcription factor *(A/B-GATA) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g06391 GATA12 transcription factor *(A/B-GATA) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35809 GATA9 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06827 GATA22, CGA1, GNL transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g54359 GATA9 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g120890.3.1 GATA12, Solyc03g120890 transcription factor (GATA) 0.04 OrthoFinder output from all 47 species
Solyc07g038160.4.1 GATA22, CGA1,... transcription factor (GATA) 0.05 OrthoFinder output from all 47 species
Spa_g15001 GATA23 transcription factor *(A/B-GATA) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20099 GATA15 transcription factor *(A/B-GATA) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e032219_P001 GATA12, Zm00001e032219 transcription factor (GATA) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription IMP Interproscan
BP GO:0007623 circadian rhythm IEP Interproscan
BP GO:0009416 response to light stimulus IEP Interproscan
BP GO:0009740 gibberellic acid mediated signaling pathway IEP Interproscan
BP GO:0009910 negative regulation of flower development IMP Interproscan
BP GO:0009965 leaf morphogenesis RCA Interproscan
BP GO:0010187 negative regulation of seed germination IEP Interproscan
BP GO:0010255 glucose mediated signaling pathway IMP Interproscan
BP GO:0010380 regulation of chlorophyll biosynthetic process IMP Interproscan
BP GO:0010468 regulation of gene expression IDA Interproscan
BP GO:0030154 cell differentiation RCA Interproscan
BP GO:0045893 positive regulation of DNA-templated transcription RCA Interproscan
BP GO:0051171 regulation of nitrogen compound metabolic process IMP Interproscan
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Interproscan
Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
InterPro domains Description Start Stop
IPR000679 Znf_GATA 232 266
No external refs found!