AT5G55480 (SVL1)


Aliases : SVL1

Description : SHV3-like 1


Gene families : OG0002387 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G55480

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00174750 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL3... 0.03 OrthoFinder output from all 47 species
AMTR_s00252p00015420 SVL4,... Glycerophosphodiester phosphodiesterase GDPDL6... 0.03 OrthoFinder output from all 47 species
Adi_g019689 SVL3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14503 SVL5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.08G056600.1 SVL5, Ceric.08G056600 not classified & original description: pacid=50637619... 0.04 OrthoFinder output from all 47 species
Dac_g18847 SVL4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g15330 GPDL2, SHV3, MRH5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037754001 SVL1 Glycerophosphodiester phosphodiesterase GDPDL4... 0.02 OrthoFinder output from all 47 species
Gb_18319 SVL1 Glycerophosphodiester phosphodiesterase GDPDL4... 0.06 OrthoFinder output from all 47 species
Len_g08984 SVL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434415g0020 SNC4 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.06 OrthoFinder output from all 47 species
MA_10435620g0010 SVL1 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021443 SVL5 not classified & original description: CDS=22-1383 0.03 OrthoFinder output from all 47 species
Sam_g05113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g014490.4.1 SVL4, Solyc02g014490 Glycerophosphodiester phosphodiesterase GDPDL7... 0.03 OrthoFinder output from all 47 species
Zm00001e041063_P001 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL3... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process RCA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0005982 starch metabolic process RCA Interproscan
BP GO:0006071 glycerol metabolic process ISS Interproscan
BP GO:0007155 cell adhesion RCA Interproscan
MF GO:0008889 glycerophosphodiester phosphodiesterase activity ISS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
BP GO:0009653 anatomical structure morphogenesis RCA Interproscan
BP GO:0009664 plant-type cell wall organization RCA Interproscan
BP GO:0009832 plant-type cell wall biogenesis RCA Interproscan
BP GO:0010026 trichome differentiation IGI Interproscan
BP GO:0010054 trichoblast differentiation RCA Interproscan
BP GO:0010075 regulation of meristem growth RCA Interproscan
BP GO:0010090 trichome morphogenesis RCA Interproscan
BP GO:0010442 guard cell morphogenesis IGI Interproscan
CC GO:0031225 obsolete anchored component of membrane TAS Interproscan
BP GO:0042545 cell wall modification RCA Interproscan
BP GO:0045010 actin nucleation RCA Interproscan
CC GO:0046658 obsolete anchored component of plasma membrane IDA Interproscan
BP GO:0048364 root development RCA Interproscan
BP GO:0048765 root hair cell differentiation RCA Interproscan
BP GO:0048869 cellular developmental process RCA Interproscan
BP GO:0052541 plant-type cell wall cellulose metabolic process IGI Interproscan
BP GO:0052541 plant-type cell wall cellulose metabolic process RCA Interproscan
BP GO:0052546 cell wall pectin metabolic process RCA Interproscan
BP GO:0071555 cell wall organization RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0004312 fatty acid synthase activity IEP HCCA
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0007166 cell surface receptor signaling pathway IEP HCCA
BP GO:0007167 enzyme-linked receptor protein signaling pathway IEP HCCA
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009409 response to cold IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009624 response to nematode IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009808 lignin metabolic process IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0009834 plant-type secondary cell wall biogenesis IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016125 sterol metabolic process IEP HCCA
BP GO:0016126 sterol biosynthetic process IEP HCCA
BP GO:0016128 phytosteroid metabolic process IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
BP GO:0016131 brassinosteroid metabolic process IEP HCCA
BP GO:0016132 brassinosteroid biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0042335 cuticle development IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
CC GO:0045298 tubulin complex IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
BP GO:0048653 anther development IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071258 cellular response to gravity IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR030395 GP_PDE_dom 371 662
No external refs found!