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  5. AT5G53530

AT5G53530 (VPS26A)


Aliases : VPS26A

Description : vacuolar protein sorting 26A


Gene families : OG0003204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003204_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G53530
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Aob_g01018 VPS26B component *(VPS26) of Retromer protein recycling complex... 0.04 OrthoFinder output from all 47 species
Azfi_s0081.g038547 VPS26B component *(VPS26) of Retromer protein recycling complex... 0.02 OrthoFinder output from all 47 species
Mp1g01930.1 VPS26B component VPS26 of Retromer protein recycling complex 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011183 VPS26B component *(VPS26) of Retromer protein recycling complex... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000902 cell morphogenesis RCA Interproscan
CC GO:0005771 multivesicular body IDA Interproscan
BP GO:0006623 protein targeting to vacuole RCA Interproscan
BP GO:0006886 intracellular protein transport ISS Interproscan
BP GO:0008333 endosome to lysosome transport ISS Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0016020 membrane IDA Interproscan
BP GO:0016049 cell growth RCA Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
BP GO:0016197 endosomal transport RCA Interproscan
CC GO:0030904 retromer complex IDA Interproscan
CC GO:0030904 retromer complex ISS Interproscan
BP GO:0042147 retrograde transport, endosome to Golgi ISS Interproscan
CC GO:0043231 intracellular membrane-bounded organelle IDA Interproscan
BP GO:0048193 Golgi vesicle transport RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004520 endodeoxyribonuclease activity IEP HCCA
MF GO:0004536 deoxyribonuclease activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006294 nucleotide-excision repair, preincision complex assembly IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009734 auxin-activated signaling pathway IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010213 non-photoreactive DNA repair IEP HCCA
BP GO:0010224 response to UV-B IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
MF GO:0017108 5'-flap endonuclease activity IEP HCCA
BP GO:0019374 galactolipid metabolic process IEP HCCA
BP GO:0019375 galactolipid biosynthetic process IEP HCCA
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP HCCA
MF GO:0030151 molybdenum ion binding IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043545 molybdopterin cofactor metabolic process IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
MF GO:0048256 flap endonuclease activity IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051189 prosthetic group metabolic process IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR028934 Vps26-related 8 283
No external refs found!