AT5G48140

Description : Pectin lyase-like superfamily protein

Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G48140
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00270640	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.14	OrthoFinder output from all 47 species
AMTR_s00019p00130680	evm_27.TU.AmTr_v1...	Cell wall.pectin.modification and degradation.pectin lyase	0.03	OrthoFinder output from all 47 species
GSVIVT01028044001	PGA4	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana	0.11	OrthoFinder output from all 47 species
GSVIVT01030017001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.08	OrthoFinder output from all 47 species
GSVIVT01030023001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.1	OrthoFinder output from all 47 species
GSVIVT01030030001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.07	OrthoFinder output from all 47 species
GSVIVT01035103001	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia	0.13	OrthoFinder output from all 47 species
LOC_Os01g33300.1	LOC_Os01g33300	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.09	OrthoFinder output from all 47 species
LOC_Os02g10300.1	LOC_Os02g10300	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.06	OrthoFinder output from all 47 species
LOC_Os06g35320.1	LOC_Os06g35320	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.03	OrthoFinder output from all 47 species
LOC_Os06g40890.1	LOC_Os06g40890	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.08	OrthoFinder output from all 47 species
Solyc01g066070.3.1	Solyc01g066070	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.13	OrthoFinder output from all 47 species
Solyc06g009200.3.1	PGA4, Solyc06g009200	Polygalacturonase OS=Nicotiana tabacum...	0.13	OrthoFinder output from all 47 species
Solyc12g006293.1.1	Solyc12g006293	Polygalacturonase OS=Nicotiana tabacum...	0.04	OrthoFinder output from all 47 species
Solyc12g006313.1.1	Solyc12g006313	Polygalacturonase OS=Nicotiana tabacum...	0.04	OrthoFinder output from all 47 species
Zm00001e002846_P002	Zm00001e002846	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.03	OrthoFinder output from all 47 species
Zm00001e014066_P002	Zm00001e014066	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e017747_P001	Zm00001e017747	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e025021_P003	Zm00001e025021	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.07	OrthoFinder output from all 47 species
Zm00001e026354_P001	Zm00001e026354	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.05	OrthoFinder output from all 47 species
Zm00001e030524_P001	Zm00001e030524	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030525_P001	Zm00001e030525	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e030528_P001	Zm00001e030528	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.02	OrthoFinder output from all 47 species
Zm00001e030529_P001	Zm00001e030529	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.06	OrthoFinder output from all 47 species
Zm00001e030530_P001	Zm00001e030530	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.08	OrthoFinder output from all 47 species
Zm00001e030533_P001	Zm00001e030533	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e030534_P001	Zm00001e030534	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e030535_P001	Zm00001e030535	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e030537_P001	Zm00001e030537	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e042494_P001	Zm00001e042494	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
BP	GO:0002238	response to molecule of fungal origin	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005199	structural constituent of cell wall	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006071	glycerol metabolic process	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
BP	GO:0009653	anatomical structure morphogenesis	IEP	HCCA
BP	GO:0009826	unidimensional cell growth	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0009860	pollen tube growth	IEP	HCCA
BP	GO:0009932	cell tip growth	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0019400	alditol metabolic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0030029	actin filament-based process	IEP	HCCA
BP	GO:0030048	actin filament-based movement	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
MF	GO:0046910	pectinesterase inhibitor activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	48	374

External Links

No external refs found!

AT5G48140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation