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  5. AT5G42340

AT5G42340 (PUB15)


Aliases : PUB15

Description : Plant U-Box 15


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G42340

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 PUB15,... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
AMTR_s00086p00031680 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G29340 ATPUB17, PUB17 plant U-box 17 0.04 OrthoFinder output from all 47 species
AT5G01830 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g025519 PUB14, ATPUB14 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g07263 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g09883 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07408 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g08869 PUB15 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g03799 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09506 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13982 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03476 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01345 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19192 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19819 ATPUB17, PUB17 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000295 No alias not classified & original description: CDS=1-2304 0.04 OrthoFinder output from all 47 species
Azfi_s0292.g063403 No alias not classified & original description: CDS=1-2253 0.05 OrthoFinder output from all 47 species
Cba_g02580 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19264 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.07G010000.1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G010300.1 ATPUB17, PUB17,... not classified & original description: pacid=50611933... 0.03 OrthoFinder output from all 47 species
Ceric.13G074400.1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.26G012900.1 Ceric.26G012900 not classified & original description: pacid=50598948... 0.06 OrthoFinder output from all 47 species
Dac_g36575 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07071 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g51928 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01430 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g03925 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06975 ATPUB17, PUB17 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g15928 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29208 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009896001 PUB15 U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01016225001 PUB14, ATPUB14 U-box domain-containing protein 14 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01024985001 PUB13, ATPUB13 U-box domain-containing protein 13 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_12875 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Gb_13754 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os05g39930.1 LOC_Os05g39930 U-box domain-containing protein 16 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os06g51130.1 PUB15, LOC_Os06g51130 U-box domain-containing protein 15 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
LOC_Os08g32060.1 LOC_Os08g32060 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os08g37570.1 PUB15, LOC_Os08g37570 U-box domain-containing protein 15 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Len_g08149 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Len_g41496 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
MA_27512g0010 PUB15 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
MA_29517g0010 No alias U-box domain-containing protein 12 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
MA_9917294g0010 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.05 OrthoFinder output from all 47 species
Msp_g07856 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g08607 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g31758 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g14682 ATPUB45, PUB45 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g01986 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g09772 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g28259 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0109.g020568 PUB13, ATPUB13 E3 ubiquitin ligase & original description: CDS=347-2224 0.03 OrthoFinder output from all 47 species
Sam_g19747 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Smo231208 PUB13, ATPUB13 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Smo415326 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula 0.02 OrthoFinder output from all 47 species
Solyc04g077850.3.1 Solyc04g077850 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc04g082440.4.1 PUB15, Solyc04g082440 U-box domain-containing protein 15 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Solyc11g008390.2.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.04 OrthoFinder output from all 47 species
Solyc11g066040.2.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc12g094610.3.1 PUB15, Solyc12g094610 U-box domain-containing protein 15 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Spa_g05552 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g25117 PUB14, ATPUB14 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g06505 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g07352 ATPUB17, PUB17 E3 ubiquiTin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14575 PUB18, ATPUB18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e002954_P001 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e003398_P001 PUB15, Zm00001e003398 U-box domain-containing protein 15 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e013323_P001 PUB15, Zm00001e013323 U-box domain-containing protein 15 OS=Arabidopsis... 0.06 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Zm00001e028839_P001 Zm00001e028839 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e031915_P001 Zm00001e031915 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e035415_P001 Zm00001e035415 U-box domain-containing protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0030048 actin filament-based movement RCA Interproscan
BP GO:0048868 pollen tube development RCA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000902 cell morphogenesis IEP HCCA
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009826 unidimensional cell growth IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009860 pollen tube growth IEP HCCA
BP GO:0009932 cell tip growth IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
BP GO:0030036 actin cytoskeleton organization IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
CC GO:0042995 cell projection IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0048468 cell development IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
BP GO:0051017 actin filament bundle assembly IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0061572 actin filament bundle organization IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0080092 regulation of pollen tube growth IEP HCCA
BP GO:0080147 root hair cell development IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 291 360
IPR000225 Armadillo 410 449
IPR000225 Armadillo 494 531
IPR000225 Armadillo 533 569
No external refs found!