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  5. AT5G41770

AT5G41770


Description : crooked neck protein, putative / cell cycle protein, putative


Gene families : OG0004678 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004678_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G41770

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00234420 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Aev_g03298 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.02 OrthoFinder output from all 47 species
Aob_g14895 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.02 OrthoFinder output from all 47 species
Cre14.g621000 No alias RNA processing.RNA splicing.spliceosome-associated... 0.06 OrthoFinder output from all 47 species
GSVIVT01019497001 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Gb_24869 No alias component CRN/MAC10 of non-snRNP MOS4-associated complex 0.04 OrthoFinder output from all 47 species
LOC_Os05g22260.1 LOC_Os05g22260 component CRN/MAC10 of non-snRNP MOS4-associated complex 0.07 OrthoFinder output from all 47 species
Sam_g12026 No alias component *(CRN/MAC10) of non-snRNP MOS4-associated... 0.04 OrthoFinder output from all 47 species
Solyc03g007850.1.1 Solyc03g007850 component CRN/MAC10 of non-snRNP MOS4-associated complex 0.01 OrthoFinder output from all 47 species
Solyc12g056080.2.1 Solyc12g056080 component CRN/MAC10 of non-snRNP MOS4-associated complex 0.13 OrthoFinder output from all 47 species
Zm00001e005158_P001 Zm00001e005158 component CRN/MAC10 of non-snRNP MOS4-associated complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005622 intracellular anatomical structure ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006396 RNA processing ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000741 karyogamy IEP HCCA
BP GO:0003002 regionalization IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0004084 branched-chain-amino-acid transaminase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004821 histidine-tRNA ligase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006427 histidyl-tRNA aminoacylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0010051 xylem and phloem pattern formation IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010305 leaf vascular tissue pattern formation IEP HCCA
BP GO:0010588 cotyledon vascular tissue pattern formation IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
InterPro domains Description Start Stop
IPR003107 HAT 208 236
No external refs found!