AT5G24930 (ATCOL4, COL4)

Aliases : ATCOL4, COL4

Description : CONSTANS-like 4

Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G24930

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00262710	COL2, ATCOL2,...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
Adi_g024051	COL2, ATCOL2	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g089045	COL3, ATCOL3	floral promoter *(CONSTANS) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g04849	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g17369	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene31427.t1	ATCOL4, COL4,...	floral promoter *(CONSTANS) & original description: none	0.04	OrthoFinder output from all 47 species
Cre12.g534100	COL2, ATCOL2	No description available	0.03	OrthoFinder output from all 47 species
Dcu_g14175	COL2, ATCOL2	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g26717	COL1, ATCOL1	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09042	COL3, ATCOL3	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01036037001	ATCOL4, COL4	RNA biosynthesis.transcriptional activation.C2C2...	0.05	OrthoFinder output from all 47 species
GSVIVT01036499001	COL2, ATCOL2	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
LOC_Os02g08150.1	ATCOL5, COL5,...	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
LOC_Os02g39710.1	ATCOL5, COL5,...	transcription factor (BBX-CO)	0.06	OrthoFinder output from all 47 species
LOC_Os04g42020.1	ATCOL5, COL5,...	transcription factor (BBX-CO)	0.05	OrthoFinder output from all 47 species
LOC_Os06g44450.1	ATCOL5, COL5,...	Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
LOC_Os08g15050.1	ATCOL5, COL5,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os10g41100.1	ATCOL5, COL5,...	Transcription factor GHD7 OS=Oryza sativa subsp....	0.05	OrthoFinder output from all 47 species
Lfl_g08431	COL2, ATCOL2	floral promoter *(CONSTANS) & original description: none	0.05	OrthoFinder output from all 47 species
Mp8g13470.1	ATCOL4, COL4	transcription factor (BBX-CO)	0.03	OrthoFinder output from all 47 species
Msp_g04847	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g31635	ATCOL5, COL5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g48282	COL1, ATCOL1	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002977	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: CDS=1-1206	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005340	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: CDS=210-1442	0.03	OrthoFinder output from all 47 species
Spa_g06395	ATCOL4, COL4	floral promoter *(CONSTANS) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002319_P001	ATCOL4, COL4,...	Transcription factor GHD7 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Zm00001e007691_P001	Zm00001e007691	transcription factor (BBX-CO)	0.05	OrthoFinder output from all 47 species
Zm00001e022933_P001	COL3, ATCOL3,...	transcription factor (BBX-CO)	0.03	OrthoFinder output from all 47 species
Zm00001e037706_P002	ATCOL5, COL5,...	Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Zm00001e037873_P001	ATCOL4, COL4,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e041152_P001	ATCOL5, COL5,...	transcription factor (BBX-CO)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006873	cellular monoatomic ion homeostasis	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0030003	cellular monoatomic cation homeostasis	RCA	Interproscan
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050801	monoatomic ion homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051668	localization within membrane	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0055080	monoatomic cation homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009642	response to light intensity	IEP	HCCA
BP	GO:0009644	response to high light intensity	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010099	regulation of photomorphogenesis	IEP	HCCA
BP	GO:0010114	response to red light	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010161	red light signaling pathway	IEP	HCCA
BP	GO:0010218	response to far red light	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0071214	cellular response to abiotic stimulus	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
BP	GO:0071491	cellular response to red light	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0104004	cellular response to environmental stimulus	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000030	regulation of response to red or far red light	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010402	CCT_domain	339	381
IPR000315	Znf_B-box	48	87
IPR000315	Znf_B-box	90	135

External Links

No external refs found!

AT5G24930 (ATCOL4, COL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation