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AT5G17790 (VAR3)


Aliases : VAR3

Description : zinc finger (Ran-binding) family protein


Gene families : OG0018338 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0018338_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G17790
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01029939001 VAR3 Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os01g59980.1 VAR3, LOC_Os01g59980 RNA editing factor (OZ-type) 0.05 OrthoFinder output from all 47 species
Solyc01g057780.3.1 VAR3, Solyc01g057780 RNA editing factor (OZ-type) 0.08 OrthoFinder output from all 47 species
Zm00001e019475_P001 VAR3, Zm00001e019475 RNA editing factor (OZ-type) 0.05 OrthoFinder output from all 47 species
Zm00001e028874_P001 VAR3, Zm00001e028874 RNA editing factor (OZ-type) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009570 chloroplast stroma IDA Interproscan
BP GO:0009658 chloroplast organization IMP Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004072 aspartate kinase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004412 homoserine dehydrogenase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0019202 amino acid kinase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 277 303
IPR001876 Znf_RanBP2 310 337
No external refs found!