AT5G12080 (MSL10, ATMSL10)

Aliases : MSL10, ATMSL10

Description : mechanosensitive channel of small conductance-like 10

Gene families : OG0000689 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000689_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G12080

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0068.g036428	MSL5	mechanosensitive ion channel *(MSL) & original...	0.05	OrthoFinder output from all 47 species
Cba_g03379	MSL5	mechanosensitive ion channel *(MSL) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.02G100500.1	MSL5, Ceric.02G100500	mechanosensitive ion channel *(MSL) & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G100600.1	MSL6, Ceric.02G100600	mechanosensitive ion channel *(MSL) & original...	0.03	OrthoFinder output from all 47 species
Dac_g12993	MSL6	mechanosensitive ion channel *(MSL) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g48251	MSL5	mechanosensitive ion channel *(MSL) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g10976	MSL4	mechanosensitive ion channel *(MSL) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g32324	MSL5	mechanosensitive ion channel *(MSL) & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01015112001	MSL10, ATMSL10	Solute transport.channels.MSL mechanosensitive ion channel	0.03	OrthoFinder output from all 47 species
Msp_g15988	MSL5	mechanosensitive ion channel *(MSL) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g29070	ATHSP70, HSP70	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g25861	MSL6	mechanosensitive ion channel *(MSL) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015319	MSL5	mechanosensitive ion channel *(MSL) & original...	0.03	OrthoFinder output from all 47 species
Sam_g47206	No alias	mechanosensitive ion channel *(MSL) & original description: none	0.04	OrthoFinder output from all 47 species
Solyc08g061980.4.1	MSL10, ATMSL10,...	mechanosensitive ion channel (MSL)	0.04	OrthoFinder output from all 47 species
Tin_g11582	MSL4	mechanosensitive ion channel *(MSL) & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	monoatomic ion transport	None	Extended
BP	GO:0006820	monoatomic anion transport	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008381	mechanosensitive monoatomic ion channel activity	IDA	Interproscan
MF	GO:0008381	mechanosensitive monoatomic ion channel activity	IMP	Interproscan
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009612	response to mechanical stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
CC	GO:0016020	membrane	ISS	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022839	monoatomic ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0050982	detection of mechanical stimulus	IMP	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000280	nuclear division	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004702	obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005663	DNA replication factor C complex	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007000	nucleolus organization	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
MF	GO:0008327	methyl-CpG binding	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009887	animal organ morphogenesis	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010051	xylem and phloem pattern formation	IEP	HCCA
BP	GO:0010058	regulation of atrichoblast fate specification	IEP	HCCA
BP	GO:0010059	positive regulation of atrichoblast fate specification	IEP	HCCA
BP	GO:0010061	regulation of trichoblast fate specification	IEP	HCCA
BP	GO:0010063	positive regulation of trichoblast fate specification	IEP	HCCA
BP	GO:0010071	root meristem specification	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010087	phloem or xylem histogenesis	IEP	HCCA
BP	GO:0010089	xylem development	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	HCCA
CC	GO:0010369	chromocenter	IEP	HCCA
MF	GO:0010385	double-stranded methylated DNA binding	IEP	HCCA
BP	GO:0010424	DNA methylation on cytosine within a CG sequence	IEP	HCCA
MF	GO:0010428	methyl-CpNpG binding	IEP	HCCA
MF	GO:0010429	methyl-CpNpN binding	IEP	HCCA
BP	GO:0010453	regulation of cell fate commitment	IEP	HCCA
BP	GO:0010455	positive regulation of cell fate commitment	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
BP	GO:0016444	somatic cell DNA recombination	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031445	regulation of heterochromatin formation	IEP	HCCA
BP	GO:0031453	positive regulation of heterochromatin formation	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0031508	pericentric heterochromatin formation	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0042659	regulation of cell fate specification	IEP	HCCA
BP	GO:0042660	positive regulation of cell fate specification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0044089	positive regulation of cellular component biogenesis	IEP	HCCA
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0045597	positive regulation of cell differentiation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
MF	GO:0051219	phosphoprotein binding	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0090308	regulation of DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0090309	positive regulation of DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
BP	GO:0120261	regulation of heterochromatin organization	IEP	HCCA
BP	GO:0120263	positive regulation of heterochromatin organization	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:0140719	constitutive heterochromatin formation	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1902275	regulation of chromatin organization	IEP	HCCA
BP	GO:1903888	regulation of plant epidermal cell differentiation	IEP	HCCA
BP	GO:1903890	positive regulation of plant epidermal cell differentiation	IEP	HCCA
BP	GO:1905269	positive regulation of chromatin organization	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000067	regulation of root morphogenesis	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2001252	positive regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006685	MscS_channel	514	719

External Links

No external refs found!

AT5G12080 (MSL10, ATMSL10)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation