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  5. AT5G11700

AT5G11700


Description : LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G32920.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).


Gene families : OG0003785 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003785_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G11700
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
AT4G32920 No alias glycine-rich protein 0.01 OrthoFinder output from all 47 species
Aev_g09299 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Als_g58409 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0035.g025604 No alias not classified & original description: CDS=245-4675 0.03 OrthoFinder output from all 47 species
Dcu_g11786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035328001 No alias No description available 0.06 OrthoFinder output from all 47 species
LOC_Os04g10380.1 LOC_Os04g10380 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_131080g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp8g11390.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Ppi_g05353 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc08g065980.3.1 Solyc08g065980 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e016607_P001 Zm00001e016607 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e031231_P002 Zm00001e031231 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e040584_P001 Zm00001e040584 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
CC GO:0005773 vacuole IDA Interproscan
BP GO:0006486 protein glycosylation RCA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001046 core promoter sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
BP GO:0001708 cell fate specification IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004430 1-phosphatidylinositol 4-kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006419 alanyl-tRNA aminoacylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008240 tripeptidyl-peptidase activity IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009880 embryonic pattern specification IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0010019 chloroplast-nucleus signaling pathway IEP HCCA
BP GO:0010074 maintenance of meristem identity IEP HCCA
BP GO:0010093 specification of floral organ identity IEP HCCA
CC GO:0012506 vesicle membrane IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0019827 stem cell population maintenance IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
CC GO:0030659 cytoplasmic vesicle membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0035619 root hair tip IEP HCCA
BP GO:0040034 regulation of development, heterochronic IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045596 negative regulation of cell differentiation IEP HCCA
BP GO:0048497 maintenance of floral organ identity IEP HCCA
BP GO:0048506 regulation of timing of meristematic phase transition IEP HCCA
BP GO:0048509 regulation of meristem development IEP HCCA
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048768 root hair cell tip growth IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
CC GO:0051286 cell tip IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0052742 phosphatidylinositol kinase activity IEP HCCA
CC GO:0060187 cell pole IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090700 maintenance of plant organ identity IEP HCCA
BP GO:0090701 specification of plant organ identity IEP HCCA
BP GO:0098727 maintenance of cell number IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA

No InterPro domains available for this sequence

No external refs found!