AT5G11510 (AtMYB3R4, MYB3R-4)

Aliases : AtMYB3R4, MYB3R-4

Description : myb domain protein 3r-4

Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G11510
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00252990	AtMYB124,...	RNA biosynthesis.transcriptional activation.MYB...	0.08	OrthoFinder output from all 47 species
AMTR_s00109p00061950	MYB3R-1,...	RNA biosynthesis.transcriptional activation.MYB...	0.2	OrthoFinder output from all 47 species
Aev_g16421	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14702	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.1	OrthoFinder output from all 47 species
Als_g20384	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g27407	ATMYB3R5, MYB3R-5	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g47836	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g09729	ATMYB3R5, MYB3R-5	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12966	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene32034.t1	AtMYB124,...	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene47785.t1	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.1	OrthoFinder output from all 47 species
Azfi_s0145.g051658	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0179.g056258	MYB3R-1,...	R1R2R3-MYB transcription factor & original description:...	0.09	OrthoFinder output from all 47 species
Azfi_s0390.g067689	MYB3R-1,...	R1R2R3-MYB transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.13G051800.1	MYB88, AtMYB88,...	MYB class-R2R3 transcription factor & original...	0.13	OrthoFinder output from all 47 species
Ceric.33G050100.1	MYB3R-1,...	R1R2R3-MYB transcription factor & original description:...	0.1	OrthoFinder output from all 47 species
Ceric.39G017100.1	MYB88, AtMYB88,...	MYB class-R2R3 transcription factor & original...	0.2	OrthoFinder output from all 47 species
Cre02.g103450	MYB88, AtMYB88	RNA biosynthesis.transcriptional activation.MYB...	0.01	OrthoFinder output from all 47 species
Dac_g04675	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.1	OrthoFinder output from all 47 species
Dcu_g12641	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.15	OrthoFinder output from all 47 species
Ehy_g05787	MYB77	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.02	OrthoFinder output from all 47 species
GSVIVT01015370001	MYB3R-1,...	RNA biosynthesis.transcriptional activation.MYB...	0.16	OrthoFinder output from all 47 species
GSVIVT01035663001	MYB3R-1,...	RNA biosynthesis.transcriptional activation.MYB...	0.35	OrthoFinder output from all 47 species
LOC_Os01g12860.1	MYB3R-1,...	transcription factor (MYB)	0.05	OrthoFinder output from all 47 species
LOC_Os12g13570.1	MYB3R-1,...	transcription factor (MYB)	0.25	OrthoFinder output from all 47 species
Len_g16435	ATMYB3R5, MYB3R-5	R1R2R3-MYB transcription factor & original description: none	0.08	OrthoFinder output from all 47 species
Len_g27982	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.11	OrthoFinder output from all 47 species
Len_g56915	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Lfl_g09604	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g18053	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_34970g0010	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
MA_605711g0010	No alias	Transcription factor MYB3R-4 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp1g08640.1	MYB3R-1,...	transcription factor (MYB)	0.05	OrthoFinder output from all 47 species
Msp_g20543	ATMYB3R5, MYB3R-5	R1R2R3-MYB transcription factor & original description: none	0.15	OrthoFinder output from all 47 species
Msp_g44400	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Nbi_g02270	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.18	OrthoFinder output from all 47 species
Nbi_g09308	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10936	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.21	OrthoFinder output from all 47 species
Ore_g45312	ATMYB3R5, MYB3R-5	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g45930	MYB88, AtMYB88	MYB class-R2R3 transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g08219	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015735	MYB3R-1,...	R1R2R3-MYB transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019382	MYB73, ATMYB73	MYB class-R2R3 subgroup-22/23 transcription factor &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021550	MYB3R-3, AtMYB3R3	R1R2R3-MYB transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0272.g027032	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original...	0.04	OrthoFinder output from all 47 species
Solyc08g068320.3.1	MYB3R-1,...	transcription factor (MYB)	0.06	OrthoFinder output from all 47 species
Solyc08g080580.4.1	MYB3R-1,...	transcription factor (MYB)	0.04	OrthoFinder output from all 47 species
Solyc11g071300.2.1	MYB3R-1,...	transcription factor (MYB)	0.11	OrthoFinder output from all 47 species
Spa_g39449	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g12262	MYB3R-1,...	R1R2R3-MYB transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Tin_g13864	AtMYB124, MYB124, FLP	MYB class-R2R3 transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e031356_P001	MYB3R-1,...	transcription factor (MYB)	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	None	Extended
BP	GO:0000280	nuclear division	RCA	Interproscan
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003713	transcription coactivator activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006275	regulation of DNA replication	RCA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007051	spindle organization	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
BP	GO:0009746	response to hexose	None	Extended
BP	GO:0009749	response to glucose	RCA	Interproscan
BP	GO:0009750	response to fructose	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032875	regulation of DNA endoreduplication	IMP	Interproscan
BP	GO:0034284	response to monosaccharide	None	Extended
BP	GO:0034285	response to disaccharide	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042023	DNA endoreduplication	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0048449	floral organ formation	None	Extended
BP	GO:0048451	petal formation	RCA	Interproscan
BP	GO:0048453	sepal formation	RCA	Interproscan
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051225	spindle assembly	RCA	Interproscan
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090329	regulation of DNA-templated DNA replication	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:0140694	non-membrane-bounded organelle assembly	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1902749	regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905393	plant organ formation	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000212	meiotic spindle organization	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000912	assembly of actomyosin apparatus involved in cytokinesis	IEP	HCCA
BP	GO:0000914	phragmoplast assembly	IEP	HCCA
BP	GO:0001708	cell fate specification	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005871	kinesin complex	IEP	HCCA
CC	GO:0005872	minus-end kinesin complex	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
CC	GO:0005876	spindle microtubule	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0007000	nucleolus organization	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007053	spindle assembly involved in male meiosis	IEP	HCCA
BP	GO:0007349	cellularization	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
MF	GO:0008569	minus-end-directed microtubule motor activity	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009558	embryo sac cellularization	IEP	HCCA
CC	GO:0009574	preprophase band	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009957	epidermal cell fate specification	IEP	HCCA
BP	GO:0009971	anastral spindle assembly involved in male meiosis	IEP	HCCA
BP	GO:0010342	endosperm cellularization	IEP	HCCA
BP	GO:0010583	response to cyclopentenone	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0016572	obsolete histone phosphorylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0030865	cortical cytoskeleton organization	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031122	cytoplasmic microtubule organization	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032506	cytokinetic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043622	cortical microtubule organization	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051258	protein polymerization	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0055048	anastral spindle assembly	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0090306	meiotic spindle assembly	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1902407	assembly of actomyosin apparatus involved in mitotic cytokinesis	IEP	HCCA
BP	GO:1902410	mitotic cytokinetic process	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	29	75

External Links

No external refs found!

AT5G11510 (AtMYB3R4, MYB3R-4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation