AT5G06460 (ATUBA2, UBA 2)


Aliases : ATUBA2, UBA 2

Description : ubiquitin activating enzyme 2


Gene families : OG0000675 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000675_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G06460

Target Alias Description ECC score Gene Family Method Actions
Adi_g081325 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18272 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g05605 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Als_g43363 UBA1, MOS5, ATUBA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene19298.t1 UBA1, MOS5,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0487.g073468 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.1Z131100.1 ATUBA2, UBA 2,... E1 ubiquitin-activating enzyme & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g20969 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05814 ATUBA2, UBA 2 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g09946 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g18380.3 ATUBA2, UBA 2,... ubiquitin-activating E1 protein 0.05 OrthoFinder output from all 47 species
LOC_Os07g49230.1 UBA1, MOS5,... ubiquitin-activating E1 protein 0.02 OrthoFinder output from all 47 species
MA_10436758g0010 UBA1, MOS5, ATUBA1 Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum... 0.05 OrthoFinder output from all 47 species
Ore_g06607 UBA1, MOS5, ATUBA1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06608 ATUBA2, UBA 2 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17842 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002463 No alias not classified & original description: CDS=95-505 0.03 OrthoFinder output from all 47 species
Sam_g12365 No alias E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16563 No alias E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25172 No alias E1 ubiquitin-activating enzyme & original description: none 0.03 OrthoFinder output from all 47 species
Smo145914 UBA1, MOS5, ATUBA1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Solyc09g018450.3.1 UBA1, MOS5,... ubiquitin-activating E1 protein 0.05 OrthoFinder output from all 47 species
Spa_g07965 UBA1, MOS5, ATUBA1 E1 ubiquitin-activating enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04182 UBA1, MOS5, ATUBA1 E1 ubiquiTin-activaTing enzyme & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11189 UBA1, MOS5, ATUBA1 E1 ubiquiTin-activaTing enzyme & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e023945_P001 UBA1, MOS5,... ubiquitin-activating E1 protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000741 karyogamy RCA Interproscan
MF GO:0004839 ubiquitin activating enzyme activity IMP Interproscan
MF GO:0004839 ubiquitin activating enzyme activity ISS Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IDA Interproscan
CC GO:0005634 nucleus TAS Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006310 DNA recombination RCA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process TAS Interproscan
BP GO:0009560 embryo sac egg cell differentiation RCA Interproscan
BP GO:0009640 photomorphogenesis RCA Interproscan
BP GO:0010332 response to gamma radiation RCA Interproscan
BP GO:0010564 regulation of cell cycle process RCA Interproscan
BP GO:0016567 protein ubiquitination IDA Interproscan
BP GO:0016567 protein ubiquitination RCA Interproscan
BP GO:0016571 histone methylation RCA Interproscan
BP GO:0016579 protein deubiquitination RCA Interproscan
BP GO:0032204 regulation of telomere maintenance RCA Interproscan
BP GO:0043247 telomere maintenance in response to DNA damage RCA Interproscan
BP GO:0045893 positive regulation of DNA-templated transcription RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000712 resolution of meiotic recombination intermediates IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004576 oligosaccharyl transferase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0004818 glutamate-tRNA ligase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0004826 phenylalanine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005819 spindle IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006424 glutamyl-tRNA aminoacylation IEP HCCA
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
CC GO:0009574 preprophase band IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
CC GO:0016607 nuclear speck IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031935 obsolete regulation of chromatin silencing IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045694 regulation of embryo sac egg cell differentiation IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR018965 Ub-activating_enz_E1_C 983 1072
IPR019572 UBA_E1_SCCH 659 912
IPR000594 ThiF_NAD_FAD-bd 472 971
IPR032420 E1_4HB 321 390
IPR000594 ThiF_NAD_FAD-bd 76 450
IPR032418 E1_FCCH 249 320
No external refs found!