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  5. AT5G04810

AT5G04810


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G04810
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0073.g037201 No alias trans-splicing factor *(PPR4) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.23G051700.1 Ceric.23G051700 trans-splicing factor *(PPR4) & original description:... 0.07 OrthoFinder output from all 47 species
Dcu_g11762 No alias trans-splicing factor *(PPR4) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01034651001 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.07 OrthoFinder output from all 47 species
Gb_31760 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
LOC_Os04g58780.1 LOC_Os04g58780 Pentatricopeptide repeat-containing protein At5g04810,... 0.04 OrthoFinder output from all 47 species
Lfl_g07399 No alias trans-splicing factor *(PPR4) & original description: none 0.04 OrthoFinder output from all 47 species
MA_70567g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Mp1g25160.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 OrthoFinder output from all 47 species
Solyc04g009720.1.1 Solyc04g009720 Pentatricopeptide repeat-containing protein At5g04810,... 0.03 OrthoFinder output from all 47 species
Solyc11g006680.3.1 Solyc11g006680 Pentatricopeptide repeat-containing protein At5g04810,... 0.05 OrthoFinder output from all 47 species
Zm00001e041970_P002 Zm00001e041970 Pentatricopeptide repeat-containing protein At5g04810,... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000304 response to singlet oxygen IEP HCCA
BP GO:0000373 Group II intron splicing IEP HCCA
MF GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005247 voltage-gated chloride channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006636 unsaturated fatty acid biosynthetic process IEP HCCA
BP GO:0006655 phosphatidylglycerol biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006821 chloride transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
BP GO:0009646 response to absence of light IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010239 chloroplast mRNA processing IEP HCCA
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP HCCA
BP GO:0012501 programmed cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016411 acylglycerol O-acyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033559 unsaturated fatty acid metabolic process IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
BP GO:0036473 cell death in response to oxidative stress IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
MF GO:0042171 lysophosphatidic acid acyltransferase activity IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046471 phosphatidylglycerol metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0071617 lysophospholipid acyltransferase activity IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901259 chloroplast rRNA processing IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 416 445
IPR002885 Pentatricopeptide_repeat 314 340
IPR002885 Pentatricopeptide_repeat 451 480
IPR002885 Pentatricopeptide_repeat 728 776
IPR002885 Pentatricopeptide_repeat 622 670
IPR002885 Pentatricopeptide_repeat 482 531
IPR002885 Pentatricopeptide_repeat 343 391
IPR002885 Pentatricopeptide_repeat 788 841
IPR002885 Pentatricopeptide_repeat 541 596
IPR002885 Pentatricopeptide_repeat 689 721
IPR000504 RRM_dom 167 236
No external refs found!