AT5G04240 (ELF6)


Aliases : ELF6

Description : Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein


Gene families : OG0004407 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004407_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G04240

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00114640 ELF6,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00181100 REF6,... RNA biosynthesis.transcriptional activation.JUMONJI... 0.03 OrthoFinder output from all 47 species
Adi_g014197 ELF6 histone demethylase *(PKDM9) & original description: none 0.02 OrthoFinder output from all 47 species
Gb_28739 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Mp3g07610.1 ELF6 histone demethylase (PKDM9). transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species
Solyc04g028580.3.1 ELF6, Solyc04g028580 transcription factor (JUMONJI) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006355 regulation of DNA-templated transcription RCA Interproscan
BP GO:0006355 regulation of DNA-templated transcription TAS Interproscan
BP GO:0009630 gravitropism RCA Interproscan
BP GO:0009741 response to brassinosteroid IMP Interproscan
BP GO:0009826 unidimensional cell growth IMP Interproscan
BP GO:0019344 cysteine biosynthetic process RCA Interproscan
BP GO:0033169 histone H3-K9 demethylation IMP Interproscan
BP GO:0043687 post-translational protein modification RCA Interproscan
BP GO:0045893 positive regulation of DNA-templated transcription RCA Interproscan
BP GO:0048577 negative regulation of short-day photoperiodism, flowering IMP Interproscan
BP GO:0048579 negative regulation of long-day photoperiodism, flowering IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
BP GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004534 5'-3' exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
MF GO:0008158 hedgehog receptor activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008409 5'-3' exonuclease activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009911 positive regulation of flower development IEP HCCA
BP GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0043200 response to amino acid IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:2000243 positive regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR003347 JmjC_dom 292 411
IPR003349 JmjN 17 50
No external refs found!