AT4G38600 (UPL3, KAK)

Aliases : UPL3, KAK

Description : HEAT repeat ;HECT-domain (ubiquitin-transferase)

Gene families : OG0001729 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001729_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G38600

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00100p00119160	UPL3, KAK,...	Protein degradation.peptide tagging.Ubiquitin...	0.09	OrthoFinder output from all 47 species
Adi_g077989	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.12	OrthoFinder output from all 47 species
Aev_g08003	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g49450	UPL3, KAK	LRR-domain extensin & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g02725	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g14715	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.08	OrthoFinder output from all 47 species
Als_g19314	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.06	OrthoFinder output from all 47 species
Als_g47900	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.07	OrthoFinder output from all 47 species
Aob_g20762	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.11	OrthoFinder output from all 47 species
Aop_g08791	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene26232.t1	UPL3, KAK,...	E3 ubiquitin ligase *(UPL3) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene47697.t2	UPL3, KAK,...	E3 ubiquitin ligase *(UPL3) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0003.g008108	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: CDS=419-6391	0.08	OrthoFinder output from all 47 species
Azfi_s0008.g011365	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: CDS=427-5601	0.03	OrthoFinder output from all 47 species
Azfi_s1836.g107343	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: CDS=420-4031	0.03	OrthoFinder output from all 47 species
Ceric.01G061600.1	UPL3, KAK,...	E3 ubiquitin ligase *(UPL3) & original description:...	0.13	OrthoFinder output from all 47 species
Ceric.02G085400.1	UPL3, KAK,...	E3 ubiquitin ligase *(UPL3) & original description:...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020554.36	UPL3, KAK	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Cre07.g312900	UPL3, KAK	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Dac_g02911	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g20263	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.13	OrthoFinder output from all 47 species
Dde_g21337	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g05114	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08697	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.07	OrthoFinder output from all 47 species
GSVIVT01018731001	UPL3, KAK	Protein degradation.peptide tagging.Ubiquitin...	0.09	OrthoFinder output from all 47 species
GSVIVT01024033001	UPL3, KAK	Protein degradation.peptide tagging.Ubiquitin...	0.06	OrthoFinder output from all 47 species
Gb_07121	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.11	OrthoFinder output from all 47 species
Gb_07122	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.08	OrthoFinder output from all 47 species
Gb_20276	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.12	OrthoFinder output from all 47 species
Gb_20277	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.14	OrthoFinder output from all 47 species
Gb_20278	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.06	OrthoFinder output from all 47 species
LOC_Os02g01170.1	UPL3, KAK, LOC_Os02g01170	monomeric E3 ubiquitin ligase (HECT)	0.07	OrthoFinder output from all 47 species
Len_g18323	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.05	OrthoFinder output from all 47 species
Len_g19132	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.08	OrthoFinder output from all 47 species
Lfl_g02474	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.09	OrthoFinder output from all 47 species
MA_10426439g0010	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.08	OrthoFinder output from all 47 species
MA_10428377g0020	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.05	OrthoFinder output from all 47 species
MA_10434379g0010	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.19	OrthoFinder output from all 47 species
MA_140610g0010	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.05	OrthoFinder output from all 47 species
MA_62286g0020	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.12	OrthoFinder output from all 47 species
MA_884104g0010	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.16	OrthoFinder output from all 47 species
Mp1g24750.1	UPL3, KAK	monomeric E3 ubiquitin ligase (HECT)	0.11	OrthoFinder output from all 47 species
Msp_g00722	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g13943	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g13561	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g25162	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g25807	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.11	OrthoFinder output from all 47 species
Pir_g12252	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g17671	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g009013	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: CDS=326-6067	0.04	OrthoFinder output from all 47 species
Sam_g29297	No alias	E3 ubiquitin ligase *(UPL3) & original description: none	0.15	OrthoFinder output from all 47 species
Smo146155	UPL3, KAK	Protein degradation.peptide tagging.Ubiquitin...	0.06	OrthoFinder output from all 47 species
Solyc01g111530.3.1	UPL3, KAK, Solyc01g111530	monomeric E3 ubiquitin ligase (HECT)	0.16	OrthoFinder output from all 47 species
Solyc09g007310.3.1	UPL4, Solyc09g007310	monomeric E3 ubiquitin ligase (HECT)	0.01	OrthoFinder output from all 47 species
Solyc10g055450.2.1	UPL3, KAK, Solyc10g055450	monomeric E3 ubiquitin ligase (HECT)	0.14	OrthoFinder output from all 47 species
Spa_g06979	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g17541	UPL3, KAK	E3 ubiquitin ligase *(UPL3) & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g02200	UPL3, KAK	E3 ubiquiTin ligase *(UPL3) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e008508_P001	UPL3, KAK, Zm00001e008508	monomeric E3 ubiquitin ligase (HECT)	0.11	OrthoFinder output from all 47 species
Zm00001e013385_P003	UPL3, KAK, Zm00001e013385	monomeric E3 ubiquitin ligase (HECT)	0.09	OrthoFinder output from all 47 species
Zm00001e025424_P001	UPL3, KAK, Zm00001e025424	monomeric E3 ubiquitin ligase (HECT)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0004842	ubiquitin-protein transferase activity	IBA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010091	trichome branching	IMP	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0016926	protein desumoylation	RCA	Interproscan
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042023	DNA endoreduplication	IMP	Interproscan
BP	GO:0042743	hydrogen peroxide metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050665	hydrogen peroxide biosynthetic process	RCA	Interproscan
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072593	reactive oxygen species metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903409	reactive oxygen species biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
CC	GO:0000932	P-body	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009416	response to light stimulus	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0009880	embryonic pattern specification	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010014	meristem initiation	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010071	root meristem specification	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010199	organ boundary specification between lateral organs and the meristem	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
BP	GO:0017148	negative regulation of translation	IEP	HCCA
MF	GO:0019104	DNA N-glycosylase activity	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034249	negative regulation of amide metabolic process	IEP	HCCA
BP	GO:0034508	centromere complex assembly	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035195	miRNA-mediated gene silencing	IEP	HCCA
BP	GO:0035278	miRNA-mediated gene silencing by inhibition of translation	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
CC	GO:0043076	megasporocyte nucleus	IEP	HCCA
CC	GO:0043078	polar nucleus	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048316	seed development	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0048859	formation of anatomical boundary	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051177	meiotic sister chromatid cohesion	IEP	HCCA
BP	GO:0051248	negative regulation of protein metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071365	cellular response to auxin stimulus	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
BP	GO:0090691	formation of plant organ boundary	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
BP	GO:0110154	RNA decapping	IEP	HCCA
BP	GO:0110156	methylguanosine-cap decapping	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000569	HECT_dom	1518	1888

External Links

No external refs found!

AT4G38600 (UPL3, KAK)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation