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  5. AT4G36630

AT4G36630 (EMB2754)


Aliases : EMB2754

Description : Vacuolar sorting protein 39


Gene families : OG0004665 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004665_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G36630
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00149360 EMB2754,... Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Adi_g057736 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Aev_g03386 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Als_g01957 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Aob_g14515 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Aspi01Gene25845.t1 EMB2754, Aspi01Gene25845 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Cba_g07929 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Ceric.17G019800.1 EMB2754, Ceric.17G019800 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.13 EMB2754 No description available 0.02 OrthoFinder output from all 47 species
Cre06.g278124 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g39227 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.1 OrthoFinder output from all 47 species
GSVIVT01018960001 EMB2754 Vesicle trafficking.target membrane... 0.06 OrthoFinder output from all 47 species
Gb_04249 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
LOC_Os03g50740.1 EMB2754, LOC_Os03g50740 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
MA_5487114g0010 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Mp3g21320.1 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Ppi_g02390 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Sam_g13518 No alias HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Solyc07g056660.4.1 EMB2754, Solyc07g056660 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.08 OrthoFinder output from all 47 species
Zm00001e005474_P001 EMB2754, Zm00001e005474 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation RCA Interproscan
BP GO:0006487 protein N-linked glycosylation RCA Interproscan
BP GO:0006623 protein targeting to vacuole RCA Interproscan
BP GO:0007033 vacuole organization RCA Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
BP GO:0042732 D-xylose metabolic process RCA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000325 plant-type vacuole IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
MF GO:0008195 phosphatidate phosphatase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016036 cellular response to phosphate starvation IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0048469 cell maturation IEP HCCA
BP GO:0048764 trichoblast maturation IEP HCCA
BP GO:0048765 root hair cell differentiation IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 875 983
IPR000547 Clathrin_H-chain/VPS_repeat 632 762
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 502 612
IPR001180 CNH_dom 72 277
No external refs found!