AT4G32540 (YUC, YUC1)

Aliases : YUC, YUC1

Description : Flavin-binding monooxygenase family protein

Gene families : OG0000787 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000787_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G32540

Target	Alias	Description	ECC score	Gene Family Method
AT1G04610	YUC3	YUCCA 3	0.02	OrthoFinder output from all 47 species
AT4G28720	YUC8	Flavin-binding monooxygenase family protein	0.02	OrthoFinder output from all 47 species
Aob_g25697	YUC9	flavin-dependent monooxygenase *(YUCCA) & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G116200.1	YUC5, SUPER1,...	flavin-dependent monooxygenase *(YUCCA) & original...	0.03	OrthoFinder output from all 47 species
Ceric.07G071400.1	YUC9, Ceric.07G071400	flavin-dependent monooxygenase *(YUCCA) & original...	0.03	OrthoFinder output from all 47 species
Ceric.18G084200.1	YUC9, Ceric.18G084200	flavin-dependent monooxygenase *(YUCCA) & original...	0.04	OrthoFinder output from all 47 species
Dac_g14944	YUC9	flavin-dependent monooxygenase *(YUCCA) & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01028991001	YUC3	Phytohormones.auxin.synthesis.indole-3-pyruvic acid...	0.04	OrthoFinder output from all 47 species
LOC_Os01g16714.1	YUC10, LOC_Os01g16714	flavin monooxygenase (YUCCA)	0.02	OrthoFinder output from all 47 species
LOC_Os01g45760.1	YUC4, LOC_Os01g45760	flavin monooxygenase (YUCCA)	0.03	OrthoFinder output from all 47 species
LOC_Os07g25540.1	YUC5, SUPER1,...	flavin monooxygenase (YUCCA)	0.03	OrthoFinder output from all 47 species
Len_g32473	YUC8	flavin-dependent monooxygenase *(YUCCA) & original...	0.05	OrthoFinder output from all 47 species
Len_g48683	YUC4	flavin-dependent monooxygenase *(YUCCA) & original...	0.03	OrthoFinder output from all 47 species
MA_46423g0010	YUC5, SUPER1	flavin monooxygenase (YUCCA)	0.03	OrthoFinder output from all 47 species
Zm00001e009558_P001	YUC5, SUPER1,...	flavin monooxygenase (YUCCA)	0.06	OrthoFinder output from all 47 species
Zm00001e020334_P001	YUC4, Zm00001e020334	flavin monooxygenase (YUCCA)	0.19	OrthoFinder output from all 47 species
Zm00001e033392_P001	YUC9, Zm00001e033392	flavin monooxygenase (YUCCA)	0.06	OrthoFinder output from all 47 species
Zm00001e038355_P001	YUC9, Zm00001e038355	flavin monooxygenase (YUCCA)	0.1	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	None	Extended
BP	GO:0009850	auxin metabolic process	None	Extended
BP	GO:0009851	auxin biosynthetic process	IMP	Interproscan
BP	GO:0009851	auxin biosynthetic process	RCA	Interproscan
BP	GO:0009909	regulation of flower development	None	Extended
BP	GO:0009911	positive regulation of flower development	IGI	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010229	inflorescence development	IGI	Interproscan
BP	GO:0010229	inflorescence development	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	IGI	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0048366	leaf development	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048582	positive regulation of post-embryonic development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048825	cotyledon development	IGI	Interproscan
BP	GO:0048825	cotyledon development	RCA	Interproscan
BP	GO:0048827	phyllome development	IGI	Interproscan
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:2000024	regulation of leaf development	IGI	Interproscan
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001708	cell fate specification	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009798	axis specification	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0009908	flower development	IEP	HCCA
BP	GO:0009943	adaxial/abaxial axis specification	IEP	HCCA
BP	GO:0009947	centrolateral axis specification	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010158	abaxial cell fate specification	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
BP	GO:0010865	stipule development	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0042803	protein homodimerization activity	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
MF	GO:0043621	protein self-association	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020946	Flavin_mOase-like	23	335

External Links

No external refs found!

AT4G32540 (YUC, YUC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation