AT4G20970

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0002401 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002401_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G20970
Cluster	HCCA: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
AT1G12540	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.05	OrthoFinder output from all 47 species
AT4G25400	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from all 47 species
Aev_g38252	BHLH100	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007772001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.05	OrthoFinder output from all 47 species
GSVIVT01018460001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
GSVIVT01020561001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.06	OrthoFinder output from all 47 species
Gb_26737	No alias	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
LOC_Os01g01870.1	LOC_Os01g01870	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
LOC_Os01g72370.1	BHLH100, LOC_Os01g72370	transcription factor (bHLH). iron/copper homeostasis...	0.03	OrthoFinder output from all 47 species
MA_938775g0010	No alias	transcription factor (bHLH)	0.05	OrthoFinder output from all 47 species
Pir_g48171	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g50631	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g114230.2.1	Solyc03g114230	Transcription factor bHLH162 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Solyc03g114237.1.1	Solyc03g114237	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc06g035490.3.1	Solyc06g035490	transcription factor (bHLH)	0.04	OrthoFinder output from all 47 species
Solyc10g008247.1.1	Solyc10g008247	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Solyc10g008260.2.1	Solyc10g008260	transcription factor (bHLH)	0.07	OrthoFinder output from all 47 species
Solyc10g079650.2.1	BHLH100, Solyc10g079650	transcription factor (bHLH). iron/copper homeostasis...	0.03	OrthoFinder output from all 47 species
Solyc10g079660.3.1	ORG2, BHLH038,...	transcription factor (bHLH). iron/copper homeostasis...	0.03	OrthoFinder output from all 47 species
Solyc12g010585.1.1	Solyc12g010585	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e017129_P001	Zm00001e017129	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	IEP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002213	defense response to insect	IEP	HCCA
MF	GO:0003865	3-oxo-5-alpha-steroid 4-dehydrogenase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004568	chitinase activity	IEP	HCCA
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009694	jasmonic acid metabolic process	IEP	HCCA
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010154	fruit development	IEP	HCCA
BP	GO:0010200	response to chitin	IEP	HCCA
BP	GO:0010243	response to organonitrogen compound	IEP	HCCA
BP	GO:0015711	organic anion transport	IEP	HCCA
BP	GO:0015804	neutral amino acid transport	IEP	HCCA
BP	GO:0015824	proline transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016229	steroid dehydrogenase activity	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
MF	GO:0033765	steroid dehydrogenase activity, acting on the CH-CH group of donors	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0043900	obsolete regulation of multi-organism process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046910	pectinesterase inhibitor activity	IEP	HCCA
BP	GO:0046942	carboxylic acid transport	IEP	HCCA
BP	GO:0048480	stigma development	IEP	HCCA
BP	GO:0048653	anther development	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
MF	GO:0052694	jasmonoyl-isoleucine-12-hydroxylase activity	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	16	64

External Links

No external refs found!

AT4G20970

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation