AT4G16340 (SPK1)

Aliases : SPK1

Description : guanyl-nucleotide exchange factors;GTPase binding;GTP binding

Gene families : OG0004216 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004216_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G16340

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00119p00032770	SPK1,...	Multi-process regulation.Rop GTPase regulatory...	0.05	OrthoFinder output from all 47 species
Adi_g019435	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.03	OrthoFinder output from all 47 species
Aev_g01612	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.03	OrthoFinder output from all 47 species
Als_g01211	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.03	OrthoFinder output from all 47 species
Aob_g23656	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.03	OrthoFinder output from all 47 species
Aop_g20118	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene72118.t1	SPK1, Aspi01Gene72118	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.04	OrthoFinder output from all 47 species
Azfi_s0050.g030972	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.04	OrthoFinder output from all 47 species
Cba_g02116	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.02	OrthoFinder output from all 47 species
Ceric.09G010400.1	SPK1, Ceric.09G010400	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.04	OrthoFinder output from all 47 species
Dac_g12527	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.02	OrthoFinder output from all 47 species
Dcu_g02063	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.06	OrthoFinder output from all 47 species
GSVIVT01014992001	SPK1	Multi-process regulation.Rop GTPase regulatory...	0.08	OrthoFinder output from all 47 species
Gb_23749	SPK1	DHR2-type RopGEF guanine nucleotide exchange factor	0.04	OrthoFinder output from all 47 species
LOC_Os03g21080.1	SPK1, LOC_Os03g21080	DHR2-type RopGEF guanine nucleotide exchange factor	0.07	OrthoFinder output from all 47 species
Len_g10487	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.04	OrthoFinder output from all 47 species
Lfl_g05754	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.03	OrthoFinder output from all 47 species
MA_107789g0010	SPK1	Guanine nucleotide exchange factor SPIKE 1...	0.04	OrthoFinder output from all 47 species
Mp2g06170.1	SPK1	DHR2-type RopGEF guanine nucleotide exchange factor	0.08	OrthoFinder output from all 47 species
Msp_g24637	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.03	OrthoFinder output from all 47 species
Ppi_g18632	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.04	OrthoFinder output from all 47 species
Sam_g25970	No alias	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.04	OrthoFinder output from all 47 species
Solyc08g016060.1.1	SPK1, Solyc08g016060	Guanine nucleotide exchange factor SPIKE 1...	0.06	OrthoFinder output from all 47 species
Solyc08g016070.3.1	SPK1, Solyc08g016070	Guanine nucleotide exchange factor SPIKE 1...	0.04	OrthoFinder output from all 47 species
Spa_g09085	SPK1	RopGEF guanine nucleotide exchange factor *(SPIKE) &...	0.04	OrthoFinder output from all 47 species
Zm00001e001542_P004	SPK1, Zm00001e001542	DHR2-type RopGEF guanine nucleotide exchange factor	0.1	OrthoFinder output from all 47 species
Zm00001e038257_P006	SPK1, Zm00001e038257	DHR2-type RopGEF guanine nucleotide exchange factor	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	RCA	Interproscan
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006084	acetyl-CoA metabolic process	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006637	acyl-CoA metabolic process	None	Extended
BP	GO:0006694	steroid biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007015	actin filament organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007020	microtubule nucleation	RCA	Interproscan
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008202	steroid metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009799	specification of symmetry	None	Extended
BP	GO:0009855	determination of bilateral symmetry	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	RCA	Interproscan
BP	GO:0010073	meristem maintenance	RCA	Interproscan
BP	GO:0010075	regulation of meristem growth	RCA	Interproscan
BP	GO:0010090	trichome morphogenesis	RCA	Interproscan
BP	GO:0010817	regulation of hormone levels	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016125	sterol metabolic process	None	Extended
BP	GO:0016126	sterol biosynthetic process	RCA	Interproscan
BP	GO:0016128	phytosteroid metabolic process	None	Extended
BP	GO:0016129	phytosteroid biosynthetic process	None	Extended
BP	GO:0016131	brassinosteroid metabolic process	None	Extended
BP	GO:0016132	brassinosteroid biosynthetic process	RCA	Interproscan
BP	GO:0016192	vesicle-mediated transport	IMP	Interproscan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
CC	GO:0019898	extrinsic component of membrane	IDA	Interproscan
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035383	thioester metabolic process	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0045010	actin nucleation	RCA	Interproscan
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
CC	GO:0070971	endoplasmic reticulum exit site	IDA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0097435	supramolecular fiber organization	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
BP	GO:0003002	regionalization	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0003730	mRNA 3'-UTR binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEP	HCCA
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	HCCA
MF	GO:0004430	1-phosphatidylinositol 4-kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
MF	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005798	Golgi-associated vesicle	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006897	endocytosis	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0007021	tubulin complex assembly	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009615	response to virus	IEP	HCCA
BP	GO:0009616	RNAi-mediated antiviral immune response	IEP	HCCA
BP	GO:0009626	plant-type hypersensitive response	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009789	positive regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
BP	GO:0009967	positive regulation of signal transduction	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010065	primary meristem tissue development	IEP	HCCA
BP	GO:0010068	protoderm histogenesis	IEP	HCCA
BP	GO:0010267	ta-siRNA processing	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0010647	positive regulation of cell communication	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016441	post-transcriptional gene silencing	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0023056	positive regulation of signaling	IEP	HCCA
BP	GO:0030036	actin cytoskeleton organization	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030133	transport vesicle	IEP	HCCA
CC	GO:0030135	coated vesicle	IEP	HCCA
CC	GO:0030136	clathrin-coated vesicle	IEP	HCCA
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
CC	GO:0031209	SCAR complex	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0034050	programmed cell death induced by symbiont	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0035194	RNA-mediated post-transcriptional gene silencing	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042335	cuticle development	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044403	biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0045595	regulation of cell differentiation	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
CC	GO:0048471	perinuclear region of cytoplasm	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0048508	embryonic meristem development	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048645	animal organ formation	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
MF	GO:0051015	actin filament binding	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051258	protein polymerization	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051607	defense response to virus	IEP	HCCA
BP	GO:0051702	biological process involved in interaction with symbiont	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0052386	cell wall thickening	IEP	HCCA
BP	GO:0052543	callose deposition in cell wall	IEP	HCCA
MF	GO:0052742	phosphatidylinositol kinase activity	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
MF	GO:0070273	phosphatidylinositol-4-phosphate binding	IEP	HCCA
MF	GO:0070300	phosphatidic acid binding	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0140546	defense response to symbiont	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	HCCA
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR027007	C2_DOCK-type_domain	462	630

External Links

No external refs found!

AT4G16340 (SPK1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation