AT4G15430

Description : ERD (early-responsive to dehydration stress) family protein

Gene families : OG0000264 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G15430

Target	Alias	Description	ECC score	Gene Family Method
Aspi01Gene00231.t1	ERD4, Aspi01Gene00231	calcium-permeable channel *(OSCA) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g26928	ERD4	calcium-permeable channel *(OSCA) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g27537	No alias	calcium-permeable channel *(OSCA) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.1Z101700.1	Ceric.1Z101700	not classified & original description: pacid=50565775...	0.04	OrthoFinder output from all 47 species
Ceric.28G040200.1	Ceric.28G040200	calcium-permeable channel *(OSCA) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g28230	ERD4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g24317	ERD4	calcium-permeable channel *(OSCA) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10551g0010	No alias	Protein OSCA1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Nbi_g08382	No alias	calcium-permeable channel *(OSCA) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g13770	No alias	calcium-permeable channel *(OSCA) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g20112	ERD4	calcium-permeable channel *(OSCA) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc07g048110.4.1	Solyc07g048110	calcium-permeable channel (OSCA)	0.05	OrthoFinder output from all 47 species
Solyc08g076310.3.1	Solyc08g076310	calcium-permeable channel (OSCA)	0.02	OrthoFinder output from all 47 species
Spa_g06692	No alias	calcium-permeable channel *(OSCA) & original description: none	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0007623	circadian rhythm	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009723	response to ethylene	RCA	Interproscan
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009733	response to auxin	RCA	Interproscan
BP	GO:0009737	response to abscisic acid	RCA	Interproscan
BP	GO:0009739	response to gibberellin	RCA	Interproscan
BP	GO:0009751	response to salicylic acid	RCA	Interproscan
BP	GO:0009753	response to jasmonic acid	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048571	long-day photoperiodism	None	Extended
BP	GO:0048573	photoperiodism, flowering	None	Extended
BP	GO:0048574	long-day photoperiodism, flowering	RCA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0008655	pyrimidine-containing compound salvage	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009638	phototropism	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009838	abscission	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
BP	GO:0009954	proximal/distal pattern formation	IEP	HCCA
BP	GO:0010016	shoot system morphogenesis	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0010227	floral organ abscission	IEP	HCCA
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	HCCA
BP	GO:0010600	regulation of auxin biosynthetic process	IEP	HCCA
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019904	protein domain specific binding	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0032350	regulation of hormone metabolic process	IEP	HCCA
BP	GO:0032922	circadian regulation of gene expression	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0042754	negative regulation of circadian rhythm	IEP	HCCA
BP	GO:0043100	pyrimidine nucleobase salvage	IEP	HCCA
BP	GO:0043393	regulation of protein binding	IEP	HCCA
BP	GO:0043433	negative regulation of DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0043496	regulation of protein homodimerization activity	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0043966	histone H3 acetylation	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	HCCA
BP	GO:0048439	flower morphogenesis	IEP	HCCA
BP	GO:0051090	regulation of DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0051098	regulation of binding	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0090354	regulation of auxin metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003864	CSC1/OSCA1-like_7TM	373	645
IPR032880	Csc1/OSCA1-like_N	7	179
IPR027815	CSC1/OSCA1-like_cyt	200	362

External Links

No external refs found!

AT4G15430

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation